| Interleukin-18 binding protein deficiency results in gut microbiota dysbiosis and aggravated diet-induced MASH in mice | JHEP reports | | | 2026 | 40 | 43 |
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| Microbiota of healthy dental pulps under the omics loupe | International journal of molecular sciences | | | 2025 | 86 | 230 |
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| Sepsis outbreak following a probable extrinsic contamination of propofol by Escherichia coli, Geneva, 2024 | Antimicrobial resistance and infection control | | | 2025 | 10 | 76 |
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| Gut microbiota differs between ICU patients admitted for cardiac arrest and other causes : a secondary, propensity-matched cohort analysis | Intensive care medicine experimental | | | 2025 | 14 | 175 |
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| Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves | Frontiers in cellular and infection microbiology | | | 2025 | 15 | 21 |
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| Role of viral coinfection in post-pandemic invasive Group A streptococcal infections in adults, a nation-wide cohort study (iGASWISS) | European journal of clinical microbiology & infectious diseases | | | 2025 | 27 | 170 |
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| 9th International Conference on Clinical Metagenomics (ICCMg9) : meeting report | Trends in microbiology | | | 2025 | 16 | 0 |
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| Next-Generation Sequencing Techniques to Diagnose Culture-Negative Subacute Native Aortic Endocarditis | Emerging infectious diseases | | | 2025 | 25 | 198 |
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| Primary meningococcal arthritis by a nonencapsulated Neisseria meningitidis strain | Clinical microbiology and infection | | | 2025 | 10 | 0 |
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| Early reduction in gut microbiota diversity in critically ill patients is associated with mortality | Annals of intensive care | | | 2024 | 42 | 169 |
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| Current state and perspective of implementation of clinical metagenomics : Geneva ICCMg meeting report | Trends in microbiology | | | 2024 | 72 | 0 |
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| Gut microbiota associations with chronic kidney disease : insights into nutritional and inflammatory parameters | Frontiers in microbiology | | | 2024 | 130 | 163 |
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| Case report : Chronic Candida albicans meningitis : a rare entity diagnosed by metagenomic next-generation sequencing | Frontiers in cellular and infection microbiology | | | 2024 | 57 | 192 |
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| Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplexed PCR panel | Clinical microbiology and infection | | | 2023 | 96 | 0 |
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| Could daily changes in respiratory microbiota help predicting early Staphylococcus aureus ventilator-associated pneumonia ? | Intensive care medicine experimental | | | 2023 | 133 | 87 |
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| Postpartum septic arthritis of pubic symphysis due to Sneathia sanguinegens, Sneathia vaginalis, and Mageeibacillus indolicus : Contribution of clinicalmetagenomics | New microbes and new infections | | | 2023 | 257 | 234 |
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| Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis Strain | Microbiology resource announcements | | | 2023 | 96 | 153 |
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| Metagenomics for the microbiological diagnosis of hospital-acquired pneumonia and ventilator-associated pneumonia (HAP/VAP) in intensive care unit (ICU): a proof-of-concept study | Respiratory research | | | 2023 | 108 | 211 |
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| The Swiss Pathogen Surveillance Platform – towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata | Microbial genomics | | | 2023 | 128 | 102 |
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| Mycoplasma genitalium Endocarditis in Prosthetic Aortic Valve | Emerging infectious diseases | | | 2023 | 110 | 110 |
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| Oral and intestinal dysbiosis in Parkinson's disease | Revue neurologique | | | 2023 | 158 | 143 |
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| A metagenomics method for the quantitative detection of bacterial pathogens causing hospital-associated and ventilator-associated pneumonia | Microbiology spectrum | | | 2023 | 91 | 139 |
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| Association between faecal microbiota and nutritional parameters in chronic kidney disease and healthy patients | 45th ESPEN Congress on Clinical Nutrition & Metabolism | | | 2023 | 103 | 126 |
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| Contribution of Clinical Metagenomics to the Diagnosis of Bone and Joint Infections | Frontiers in microbiology | | | 2022 | 124 | 154 |
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| Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing | ISME communications | | | 2022 | 92 | 290 |
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| Changes in the gut bacterial communities in colon cancer surgery patients: an observational study | Gut pathogens | | | 2022 | 242 | 219 |
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| Changes over 6 months of gut microbiota and nutritional parameters in patients with alcoholic liver disease: a prospective study | Open access journal of biomedical science | | | 2022 | 204 | 450 |
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| Oral dysbiosis and inflammation in Parkinson's disease | Journal of Parkinson's Disease | | | 2021 | 372 | 1,251 |
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| Gut barrier and microbiota changes with glycine and branched‐chain amino acid supplementation in chronic haemodialysis patients | Journal of cachexia, sarcopenia and muscle | | | 2021 | 415 | 429 |
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| Glycine increases fat‐free mass in malnourished haemodialysis patients: a randomized double‐blind crossover trial | Journal of cachexia, sarcopenia and muscle | | | 2021 | 299 | 403 |
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| The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives | Drugs | | | 2021 | 224 | 355 |
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| Case Report: About a Case of Hyperammonemia Syndrome Following Lung Transplantation: Could Metagenomic Next-Generation Sequencing Improve the Clinical Management? | Frontiers in Medicine | | | 2021 | 212 | 454 |
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| Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case report | International journal of molecular sciences | | | 2021 | 221 | 224 |
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| Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study | Frontiers in cellular and infection microbiology | | | 2021 | 349 | 199 |
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| Effects of antibiotic duration on the intestinal microbiota and resistome: The PIRATE RESISTANCE project, a cohort study nested within a randomized trial | EBioMedicine | | | 2021 | 255 | 186 |
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| Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized Trial | Microorganisms | | | 2020 | 447 | 266 |
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| Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy | Frontiers in Medicine | | | 2020 | 395 | 184 |
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| Septic shock caused by Capnocytophaga canis after a cat scratch | European Journal of Clinical Microbiology & Infectious Diseases | | | 2020 | 205 | 0 |
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| The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet | Translational Research | | | 2020 | 571 | 368 |
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| Changes in microbiota profiles after prolonged frozen storage of stool suspensions | Frontiers in Cellular and Infection Microbiology | | | 2020 | 404 | 271 |
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| First case of Cryptococcus gattii multilobar pneumonia in Switzerland and associated challenges | Swiss Medical Weekly | | | 2020 | 389 | 204 |
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| From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective | Clinical Microbiology and Infection | | | 2020 | 414 | 1 |
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| Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpoint | BMC Infectious Diseases | | | 2019 | 616 | 219 |
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| Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis | Frontiers in Medicine | | | 2019 | 395 | 295 |
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| Identification of respiratory microbiota markers in ventilator-associated pneumonia | Intensive Care Medicine | | | 2019 | 379 | 206 |
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| Targeting the gut microbiota to treat cachexia | Frontiers in Cellular and Infection Microbiology | | | 2019 | 374 | 285 |
|
| Genomic epidemiology of Neisseria meningitidis serogroup W in Switzerland between 2010 and 2016 | Journal of Infection | | | 2019 | 356 | 0 |
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| Disrupting myelin-specific Th17 cell gut homing confers protection in an adoptive transfer experimental autoimmune encephalomyelitis | Cell Reports | | | 2019 | 451 | 372 |
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| Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical Metagenomics | Frontiers in Cardiovascular Medicine | | | 2019 | 369 | 187 |
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| The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant enterobacteriaceae after traveling to tropical regions | Gut microbes | | | 2019 | 311 | 419 |
|
| Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform | Swiss Medical Weekly | | | 2018 | 311 | 274 |
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| Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements | Cell Metabolism | | | 2018 | 620 | 487 |
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| Microbiote et dénutrition : état des lieux | Revue médicale suisse | | | 2018 | 317 | 0 |
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| Fecal microbiota transplantation: a promising strategy in preventing the progression of non-alcoholic steatohepatitis and improving the anti-cancer immune response | Expert Opinion on Biological Therapy | | | 2018 | 406 | 3 |
|
| Root microbiota in primary and secondary apical periodontitis | Frontiers in Microbiology | | | 2018 | 659 | 515 |
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| When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing | Frontiers in Microbiology | | | 2018 | 524 | 319 |
|
| In vivo selection of a multidrug-resistant Aeromonas salmonicida during medicinal leech therapy | New Microbes and New Infections | | | 2018 | 1,575 | 0 |
|
| Effects of the gut-liver axis on ischemia-mediated hepatocellular carcinoma recurrence in the mouse liver | Journal of Hepatology | | | 2018 | 848 | 6 |
|
| The farming environment protects mice from allergen-induced skin contact hypersensitivity | Clinical and experimental allergy | | | 2017 | 582 | 3 |
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| Clinical Metagenomics for the Diagnostic of Hospital-acquired Infections: Promises and Hurdles | American Journal of Respiratory and Critical Care Medicine | | | 2017 | 453 | 6 |
|
| Unexpected persistence of extended-spectrum β-lactamase-producing Enterobacteriaceae in the faecal microbiota of hospitalised patients treated with imipenem | International Journal of Antimicrobial Agents | | | 2017 | 567 | 1 |
|
| Clinical metagenomics of bone and joint infections: a proof of concept study | Scientific Reports | | | 2017 | 618 | 506 |
|
| Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics | Antibiotics | | | 2017 | 424 | 370 |
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| Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing | International Journal of Molecular Sciences | | | 2017 | 477 | 440 |
|
| Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients | Frontiers in microbiology | | | 2016 | 600 | 568 |
|
| Impact of Hypocaloric Hyperproteic Diet on Gut Microbiota in Overweight or Obese Patients with Nonalcoholic Fatty Liver Disease: A Pilot Study | Digestive diseases and sciences | | | 2016 | 651 | 2 |
|
| Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR | BMC Microbiology | | | 2016 | 507 | 283 |
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| Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota | Clinical microbiology and infection | | | 2015 | 759 | 0 |
|
| Mapping axillary microbiota responsible for body odours using a culture-independent approach | Microbiome | | | 2015 | 620 | 815 |
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| Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity | The ISME journal | | | 2014 | 638 | 546 |
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| A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis | BMC genomics | | | 2014 | 713 | 396 |
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| Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients | Frontiers in cellular and infection microbiology | | | 2014 | 739 | 307 |
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| Noma affected children from niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments | PLoS neglected tropical diseases | | | 2014 | 710 | 396 |
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| Functional genomics of microbial pathogens | Briefings in functional genomics | | | 2013 | 641 | 14 |
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| Comparison of DNA extraction methods in analysis of salivary bacterial communities | PloS one | | | 2013 | 781 | 412 |
|
| Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media | Clinical microbiology and infection | | | 2013 | 734 | 393 |
|
| Analysis of the salivary microbiome using culture-independent techniques | Journal of clinical bioinformatics | | | 2012 | 750 | 326 |
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| Epidemiology and virulence insights from MRSA and MSSA genome analysis | Future microbiology | | | 2011 | 663 | 0 |
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| Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue | Frontiers in microbiology | | | 2011 | 602 | 357 |
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| Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice | Diabetes | | | 2011 | 689 | 0 |
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| Study of inter- and intra-individual variations in the salivary microbiota | BMC genomics | | | 2010 | 676 | 342 |
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| Metagenomic study of the oral microbiota by Illumina high-throughput sequencing | Journal of microbiological methods | | | 2009 | 666 | 0 |
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