| Interleukin-18 binding protein deficiency results in gut microbiota dysbiosis and aggravated diet-induced MASH in mice | JHEP reports |  | | 2026 | 52 | 71 |
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| Microbiota of healthy dental pulps under the omics loupe | International journal of molecular sciences | | | 2025 | 107 | 310 |
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| Sepsis outbreak following a probable extrinsic contamination of propofol by Escherichia coli, Geneva, 2024 | Antimicrobial resistance and infection control | | | 2025 | 21 | 127 |
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| Gut microbiota differs between ICU patients admitted for cardiac arrest and other causes : a secondary, propensity-matched cohort analysis | Intensive care medicine experimental | | | 2025 | 22 | 225 |
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| Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves | Frontiers in cellular and infection microbiology | | | 2025 | 21 | 29 |
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| Role of viral coinfection in post-pandemic invasive Group A streptococcal infections in adults, a nation-wide cohort study (iGASWISS) | European journal of clinical microbiology & infectious diseases | | | 2025 | 33 | 241 |
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| 9th International Conference on Clinical Metagenomics (ICCMg9) : meeting report | Trends in microbiology |  | | 2025 | 21 | 0 |
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| Next-Generation Sequencing Techniques to Diagnose Culture-Negative Subacute Native Aortic Endocarditis | Emerging infectious diseases | | | 2025 | 30 | 275 |
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| Primary meningococcal arthritis by a nonencapsulated Neisseria meningitidis strain | Clinical microbiology and infection | | | 2025 | 15 | 0 |
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| Early reduction in gut microbiota diversity in critically ill patients is associated with mortality | Annals of intensive care | | | 2024 | 51 | 198 |
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| Current state and perspective of implementation of clinical metagenomics : Geneva ICCMg meeting report | Trends in microbiology | | | 2024 | 77 | 0 |
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| Gut microbiota associations with chronic kidney disease : insights into nutritional and inflammatory parameters | Frontiers in microbiology | | | 2024 | 137 | 196 |
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| Case report : Chronic Candida albicans meningitis : a rare entity diagnosed by metagenomic next-generation sequencing | Frontiers in cellular and infection microbiology | | | 2024 | 63 | 271 |
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| Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplexed PCR panel | Clinical microbiology and infection | | | 2023 | 101 | 0 |
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| Could daily changes in respiratory microbiota help predicting early Staphylococcus aureus ventilator-associated pneumonia ? | Intensive care medicine experimental | | | 2023 | 138 | 103 |
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| Postpartum septic arthritis of pubic symphysis due to Sneathia sanguinegens, Sneathia vaginalis, and Mageeibacillus indolicus : Contribution of clinicalmetagenomics | New microbes and new infections | | | 2023 | 262 | 305 |
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| Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis Strain | Microbiology resource announcements | | | 2023 | 101 | 168 |
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| Metagenomics for the microbiological diagnosis of hospital-acquired pneumonia and ventilator-associated pneumonia (HAP/VAP) in intensive care unit (ICU): a proof-of-concept study | Respiratory research | | | 2023 | 113 | 253 |
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| The Swiss Pathogen Surveillance Platform – towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata | Microbial genomics | | | 2023 | 133 | 132 |
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| Mycoplasma genitalium Endocarditis in Prosthetic Aortic Valve | Emerging infectious diseases | | | 2023 | 115 | 145 |
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| Oral and intestinal dysbiosis in Parkinson's disease | Revue neurologique | | | 2023 | 164 | 162 |
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| A metagenomics method for the quantitative detection of bacterial pathogens causing hospital-associated and ventilator-associated pneumonia | Microbiology spectrum | | | 2023 | 96 | 176 |
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| Association between faecal microbiota and nutritional parameters in chronic kidney disease and healthy patients | 45th ESPEN Congress on Clinical Nutrition & Metabolism | | | 2023 | 110 | 146 |
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| Contribution of Clinical Metagenomics to the Diagnosis of Bone and Joint Infections | Frontiers in microbiology | | | 2022 | 129 | 175 |
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| Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing | ISME communications | | | 2022 | 97 | 334 |
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| Changes in the gut bacterial communities in colon cancer surgery patients: an observational study | Gut pathogens | | | 2022 | 247 | 311 |
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| Changes over 6 months of gut microbiota and nutritional parameters in patients with alcoholic liver disease: a prospective study | Open access journal of biomedical science | | | 2022 | 209 | 553 |
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| Oral dysbiosis and inflammation in Parkinson's disease | Journal of Parkinson's Disease | | | 2021 | 377 | 1,300 |
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| Gut barrier and microbiota changes with glycine and branched‐chain amino acid supplementation in chronic haemodialysis patients | Journal of cachexia, sarcopenia and muscle | | | 2021 | 420 | 468 |
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| Glycine increases fat‐free mass in malnourished haemodialysis patients: a randomized double‐blind crossover trial | Journal of cachexia, sarcopenia and muscle | | | 2021 | 304 | 426 |
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| The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives | Drugs | | | 2021 | 229 | 402 |
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| Case Report: About a Case of Hyperammonemia Syndrome Following Lung Transplantation: Could Metagenomic Next-Generation Sequencing Improve the Clinical Management? | Frontiers in Medicine | | | 2021 | 217 | 494 |
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| Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case report | International journal of molecular sciences | | | 2021 | 226 | 241 |
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| Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study | Frontiers in cellular and infection microbiology | | | 2021 | 354 | 214 |
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| Effects of antibiotic duration on the intestinal microbiota and resistome: The PIRATE RESISTANCE project, a cohort study nested within a randomized trial | EBioMedicine | | | 2021 | 260 | 200 |
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| Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized Trial | Microorganisms | | | 2020 | 452 | 278 |
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| Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy | Frontiers in Medicine | | | 2020 | 400 | 203 |
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| Septic shock caused by Capnocytophaga canis after a cat scratch | European Journal of Clinical Microbiology & Infectious Diseases | | | 2020 | 210 | 0 |
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| The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet | Translational Research | | | 2020 | 577 | 424 |
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| Changes in microbiota profiles after prolonged frozen storage of stool suspensions | Frontiers in Cellular and Infection Microbiology | | | 2020 | 410 | 289 |
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| First case of Cryptococcus gattii multilobar pneumonia in Switzerland and associated challenges | Swiss Medical Weekly | | | 2020 | 394 | 231 |
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| From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective | Clinical Microbiology and Infection | | | 2020 | 419 | 1 |
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| Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpoint | BMC Infectious Diseases | | | 2019 | 621 | 226 |
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| Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis | Frontiers in Medicine | | | 2019 | 400 | 318 |
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| Identification of respiratory microbiota markers in ventilator-associated pneumonia | Intensive Care Medicine | | | 2019 | 386 | 231 |
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| Targeting the gut microbiota to treat cachexia | Frontiers in Cellular and Infection Microbiology | | | 2019 | 379 | 293 |
|
| Genomic epidemiology of Neisseria meningitidis serogroup W in Switzerland between 2010 and 2016 | Journal of Infection | | | 2019 | 362 | 0 |
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| Disrupting myelin-specific Th17 cell gut homing confers protection in an adoptive transfer experimental autoimmune encephalomyelitis | Cell Reports | | | 2019 | 456 | 421 |
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| Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical Metagenomics | Frontiers in Cardiovascular Medicine | | | 2019 | 374 | 202 |
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| The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant enterobacteriaceae after traveling to tropical regions | Gut microbes | | | 2019 | 316 | 460 |
|
| Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform | Swiss Medical Weekly | | | 2018 | 317 | 323 |
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| Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements | Cell Metabolism | | | 2018 | 628 | 524 |
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| Microbiote et dénutrition : état des lieux | Revue médicale suisse | | | 2018 | 322 | 0 |
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| Fecal microbiota transplantation: a promising strategy in preventing the progression of non-alcoholic steatohepatitis and improving the anti-cancer immune response | Expert Opinion on Biological Therapy | | | 2018 | 411 | 3 |
|
| Root microbiota in primary and secondary apical periodontitis | Frontiers in Microbiology | | | 2018 | 664 | 557 |
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| When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing | Frontiers in Microbiology | | | 2018 | 529 | 374 |
|
| In vivo selection of a multidrug-resistant Aeromonas salmonicida during medicinal leech therapy | New Microbes and New Infections | | | 2018 | 1,580 | 0 |
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| Effects of the gut-liver axis on ischemia-mediated hepatocellular carcinoma recurrence in the mouse liver | Journal of Hepatology | | | 2018 | 853 | 6 |
|
| The farming environment protects mice from allergen-induced skin contact hypersensitivity | Clinical and experimental allergy | | | 2017 | 589 | 3 |
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| Clinical Metagenomics for the Diagnostic of Hospital-acquired Infections: Promises and Hurdles | American Journal of Respiratory and Critical Care Medicine | | | 2017 | 458 | 6 |
|
| Unexpected persistence of extended-spectrum β-lactamase-producing Enterobacteriaceae in the faecal microbiota of hospitalised patients treated with imipenem | International Journal of Antimicrobial Agents | | | 2017 | 573 | 1 |
|
| Clinical metagenomics of bone and joint infections: a proof of concept study | Scientific Reports | | | 2017 | 623 | 566 |
|
| Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics | Antibiotics | | | 2017 | 429 | 427 |
|
| Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing | International Journal of Molecular Sciences | | | 2017 | 482 | 525 |
|
| Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients | Frontiers in microbiology | | | 2016 | 607 | 599 |
|
| Impact of Hypocaloric Hyperproteic Diet on Gut Microbiota in Overweight or Obese Patients with Nonalcoholic Fatty Liver Disease: A Pilot Study | Digestive diseases and sciences | | | 2016 | 658 | 2 |
|
| Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR | BMC Microbiology | | | 2016 | 512 | 297 |
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| Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota | Clinical microbiology and infection | | | 2015 | 767 | 0 |
|
| Mapping axillary microbiota responsible for body odours using a culture-independent approach | Microbiome | | | 2015 | 627 | 907 |
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| Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity | The ISME journal | | | 2014 | 645 | 572 |
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| A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis | BMC genomics | | | 2014 | 720 | 405 |
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| Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients | Frontiers in cellular and infection microbiology | | | 2014 | 749 | 321 |
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| Noma affected children from niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments | PLoS neglected tropical diseases | | | 2014 | 717 | 453 |
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| Functional genomics of microbial pathogens | Briefings in functional genomics | | | 2013 | 648 | 21 |
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| Comparison of DNA extraction methods in analysis of salivary bacterial communities | PloS one | | | 2013 | 788 | 448 |
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| Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media | Clinical microbiology and infection | | | 2013 | 741 | 413 |
|
| Analysis of the salivary microbiome using culture-independent techniques | Journal of clinical bioinformatics | | | 2012 | 757 | 330 |
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| Epidemiology and virulence insights from MRSA and MSSA genome analysis | Future microbiology | | | 2011 | 671 | 0 |
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| Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue | Frontiers in microbiology | | | 2011 | 610 | 369 |
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| Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice | Diabetes | | | 2011 | 696 | 0 |
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| Study of inter- and intra-individual variations in the salivary microbiota | BMC genomics | | | 2010 | 683 | 358 |
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| Metagenomic study of the oral microbiota by Illumina high-throughput sequencing | Journal of microbiological methods | | | 2009 | 675 | 0 |
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