Scientific article
English

From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective

Published inClinical Microbiology and Infection, vol. 26, no. 5, p. 643.e1-643.e7
Publication date2020
Abstract

Objectives: Predicting the antibiotic susceptibility phenotype from genomic data is challenging, especially for some specific antibiotics in the order Enterobacterales. Here we aimed to assess the performance of whole genomic sequencing (WGS) for predicting the antibiotic susceptibility in various Enterobacterales species using the detection of antibiotic resistance genes (ARGs), specific mutations and a knowledge-based decision algorithm.

Keywords
  • Antibiotic resistance
  • Antibiotic resistance genes
  • Antibiotic susceptibility testing
  • Bioinformatics
  • Inference
  • Whole-genome sequencing
Citation (ISO format)
RUPPE, Etienne et al. From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective. In: Clinical Microbiology and Infection, 2020, vol. 26, n° 5, p. 643.e1–643.e7. doi: 10.1016/j.cmi.2019.09.018
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Identifiers
Journal ISSN1198-743X
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