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Scientific article
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Open access
English

The Swiss Pathogen Surveillance Platform – towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata

Published inMicrobial genomics, vol. 9, no. 5, 001001
Publication date2023-05-12
Abstract

The Swiss Pathogen Surveillance Platform (SPSP) is a shared secure surveillance platform between human and veterinary medicine, to also include environmental and foodborne isolates. It enables rapid and detailed transmission monitoring and outbreak surveillance of pathogens using whole genome sequencing data and associated metadata. It features controlled data access, complex dynamic queries, dedicated dashboards and automated data sharing with international repositories, providing actionable results for public health and the vision to improve societal well-being and health.

eng
Keywords
  • Antibiotic resistance
  • Bacteria
  • Bioinformatics
  • Database
  • Epidemiology
  • Fungi
  • Molecular surveillance
  • Outbreaks
  • Research
  • Sequencing
  • Typing
  • Virulence
  • Virus
  • Genome, Bacterial
  • Genomics / methods
  • Humans
  • Metadata
  • One Health
  • Switzerland / epidemiology
Citation (ISO format)
NEVES, Aitana et al. The Swiss Pathogen Surveillance Platform – towards a nation-wide One Health data exchange platform for bacterial, viral and fungal genomics and associated metadata. In: Microbial genomics, 2023, vol. 9, n° 5, p. 001001. doi: 10.1099/mgen.0.001001
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Article (Published version)
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ISSN of the journal2057-5858
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Technical informations

Creation05/26/2023 9:44:01 AM
First validation07/04/2023 2:26:45 PM
Update time07/04/2023 2:26:45 PM
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