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| Title | Published in | Access level | OA Policy | Year | Views | Downloads | |
|---|---|---|---|---|---|---|---|
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data | Science translational medicine |  | 2023 | 54 | 24 | ||
| Longitudinal Detection of Twenty DNA and RNA Viruses in Allogeneic Hematopoietic Stem Cell Transplant Recipients Plasma | Viruses | | 2023 | 117 | 66 | ||
| SCANellome: Analysis of the Genomic Diversity of Human and Non-Human Primate Anelloviruses from Metagenomics Data | Viruses | | 2023 | 25 | 20 | ||
| Viremia as a predictor of absence of serious bacterial infection in children with fever without source | European journal of pediatrics | | 2023 | 87 | 39 | ||
| External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories | Journal of clinical microbiology | | 2022 | 319 | 124 | ||
| Reconstruction of transmission chains of SARS-CoV-2 amidst multiple outbreaks in a geriatric acute-care hospital: a combined retrospective epidemiological and genomic study | eLife | | 2022 | 180 | 95 | ||
| Human pegivirus-1 replication influences NK cell reconstitution after allogeneic haematopoietic stem cell transplantation | Frontiers in immunology | | 2022 | 73 | 33 | ||
| Occupational and community risk of SARS-CoV-2 infection among employees of a long-term care facility: an observational study | Antimicrobial resistance and infection control | | 2022 | 161 | 75 | ||
| Genomic Diversity of Torque Teno Virus in Blood Samples from Febrile Paediatric Outpatients in Tanzania: A Descriptive Cohort Study | Viruses | | 2022 | 147 | 76 | ||
| Re: Moore et al., Detection of SARS-CoV-2 within the healthcare environment: a multicentre study conducted during the first wave of the COVID-19 outbreak in England, Journal of Hospital Infection 2020;108:189-196 | Journal of Hospital Infection |  | 2021 | 275 | 0 | ||
| Explosive nosocomial outbreak of SARS-CoV-2 in a rehabilitation clinic: the limits of genomics for outbreak reconstruction | The journal of hospital infection | | 2021 | 160 | 89 | ||
| SARS-CoV-2 Evolution among Oncological Population: In-Depth Virological Analysis of a Clinical Cohort | Microorganisms | | 2021 | 148 | 82 | ||
| Unmasking viral sequences by metagenomic next-generation sequencing in adult human blood samples during steroid-refractory/dependent graft-versus-host disease | Microbiome | | 2021 | 328 | 209 | ||
| Blood virosphere in febrile Tanzanian children | Emerging Microbes & Infections | | 2021 | 352 | 140 | ||
| Clinical, virological and immunological features of a mild case of SARS-CoV-2 re-infection | Clinical Microbiology and Infection | | 2021 | 474 | 269 | ||
| Puumala Virus Infection in Family, Switzerland | Emerging Infectious Diseases | | 2021 | 364 | 101 | ||
| Sustained Trichodysplasia Spinulosa Polyomavirus Viremia Illustrating a Primary Disseminated Infection in a Kidney Transplant Recipient | Microorganisms | | 2021 | 235 | 112 | ||
| Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples | Journal of Clinical Virology | | 2021 | 204 | 117 | ||
| Beyond cytomegalovirus and Epstein-Barr Virus: a review of viruses composing the blood virome of solid organ transplant and hematopoietic stem cell transplant recipients | Clinical Microbiology Reviews | | 2020 | 188 | 394 | ||
| Virosaurus A Reference to Explore and Capture Virus Genetic Diversity | Viruses | | 2020 | 186 | 80 | ||
| Daily viral kinetics and innate and adaptive immune response assessment in COVID-19: a case series | mSphere | | 2020 | 448 | 175 | ||
| Unbiased metagenomic next-generation sequencing of blood from hospitalized febrile children in Gabon | Emerging Microbes & Infections | | 2020 | 273 | 114 | ||
| Enterovirus, parechovirus, adenovirus and herpes virus type 6 viraemia in fever without source | Archives of Disease in Childhood | | 2020 | 415 | 1 | ||
| Nearly complete genome sequence of a novel phlebovirus-like virus detected in a human plasma sample by high-throughput sequencing | Microbiology resource announcements | | 2019 | 210 | 239 | ||
| High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis, and meningitis. A narrative review and clinical appraisal | Clinical Microbiology and Infection | | 2019 | 331 | 0 | ||
| Viral metagenomics in the clinical realm: lessons learned from a swiss-wide ring trial | Genes | | 2019 | 192 | 61 | ||
| Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes | PLOS ONE | | 2019 | 170 | 81 | ||
| Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease | Frontiers in Pediatrics | | 2019 | 298 | 112 | ||
| Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system disease | Genes | | 2019 | 414 | 51 | ||
| Detection of dicistroviruses RNA in blood of febrile Tanzanian children | Emerging Microbes & Infections | | 2019 | 507 | 179 | ||
| Influenza A Virus Genetic Tools: From Clinical Sample to Molecular Clone | Influenza Virus. Methods in Molecular Biology | | 2018 | 438 | 4 | ||
| Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches | mSphere | | 2018 | 413 | 183 | ||
| Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank | Vox Sanguinis | | 2018 | 474 | 355 | ||
| Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children | Emerging Microbes & Infections | | 2018 | 333 | 143 | ||
| Novel human astroviruses in pediatric respiratory samples: A one-year survey in a Swiss tertiary care hospital | Journal of Medical Virology | | 2018 | 315 | 132 | ||
| Usutu virus in cerebrospinal fluid: A 2-year survey in a Tertiary Care Hospital, Geneva, Switzerland | Journal of Medical Virology | | 2018 | 442 | 0 | ||
| Human pegivirus persistence in the human blood virome after allogeneic haematopoietic stem cell transplantation | Clinical Microbiology and Infection | | 2018 | 1,332 | 349 | ||
| Severe viral respiratory infections in children with IFIH1 loss-of-function mutations | Proceedings of the National Academy of Sciences | | 2017 | 566 | 215 | ||
| Novel and classical human astroviruses in stool and cerebrospinal fluid: comprehensive screening in a tertiary care hospital, Switzerland | Emerging Microbes & Infections | | 2017 | 499 | 104 | ||
| Metagenomics analysis of red blood cell and fresh-frozen plasma units | Transfusion | | 2017 | 508 | 2 | ||
| Comparative analysis of viral shedding in pediatric and adult subjects with central nervous system-associated enterovirus infections from 2013 to 2015 in Switzerland | Journal of Clinical Virology | | 2017 | 541 | 199 | ||
| Hospital surveillance of influenza strains: a concordant image of viruses identified by the Swiss Sentinel system? | Influenza and other Respiratory Viruses | | 2017 | 1,436 | 345 | ||
| Ebola virus disease diagnosis by real-time RT-PCR: A comparative study of 11 different procedures | Journal of clinical virology | | 2016 | 629 | 338 | ||
| Novel human astroviruses: novel human diseases ? | Journal of clinical virology | | 2016 | 502 | 0 | ||
| Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection | Emerging infectious diseases | | 2016 | 623 | 234 | ||
| Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology | Emerging microbes & infections | | 2016 | 509 | 183 | ||
| Enterovirus and Parechovirus viraemia in young children presenting to the emergency room: Unrecognised and frequent | Journal of clinical virology | | 2015 | 548 | 2 | ||
| Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses | Clinical microbiology and infection | | 2015 | 706 | 224 | ||
| Clinical features and viral kinetics in a rapidly cured patient with Ebola virus disease: a case report | Lancet. Infectious diseases | | 2015 | 648 | 1 | ||
| Human three-dimensional engineered neural tissue reveals cellular and molecular events following cytomegalovirus infection | Biomaterials | | 2015 | 804 | 8 | ||
| E119D Neuraminidase Mutation Conferring Pan-Resistance to Neuraminidase Inhibitors in an A(H1N1)pdm09 Isolate From a Stem-Cell Transplant Recipient | The Journal of infectious diseases | 2015 | 718 | 0 | |||
| Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study | Journal of clinical microbiology | | 2014 | 698 | 260 | ||
| Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response | International journal of cancer | | 2014 | 699 | 391 | ||
| Pilot Evaluation of RT-PCR/Electrospray Ionization Mass Spectrometry (PLEX-ID/Flu assay) on Influenza-Positive Specimens | The Open virology journal | | 2012 | 625 | 745 | ||
| Identification of site-specific adaptations conferring increased neural cell tropism during human enterovirus 71 infection | PLOS pathogens | | 2012 | 790 | 400 | ||
| Appearance of a novel measles G3 strain in multiple European countries within a two month period, 2010 | Euro surveillance | | 2011 | 580 | 299 | ||
| Analytical validation of a lymphocytic choriomeningitis virus real-time RT-PCR assay | Journal of virological methods | | 2011 | 610 | 379 | ||
| Spread of Measles Virus D4-Hamburg, Europe, 2008-2011 | Emerging infectious diseases | | 2011 | 623 | 1,046 | ||
| T lymphocytes promote the antiviral and inflammatory responses of airway epithelial cells | PloS one | | 2011 | 708 | 728 | ||
| Astrovirus infection in hospitalized infants with severe combined immunodeficiency after allogeneic hematopoietic stem cell transplantation | PloS one | | 2011 | 721 | 624 | ||
| Rhinovirus genome variation during chronic upper and lower respiratory tract infections | PloS one | | 2011 | 573 | 546 | ||
| Rhinovirus genome evolution during experimental human infection | PloS one | | 2010 | 737 | 491 | ||
| New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses | Emerging infectious diseases | | 2009 | 554 | 0 | ||
| New molecular detection tools adapted to emerging rhinoviruses and enteroviruses | Journal of clinical microbiology | | 2009 | 651 | 0 | ||
| Simultaneous detection of parainfluenza viruses 1 and 3 by real-time reverse transcription-polymerase chain reaction | Journal of virological methods | | 2009 | 666 | 0 | ||
| The cis-acting replication elements define human enterovirus and rhinovirus species | RNA | | 2008 | 715 | 2 | ||
| New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features | BMC genomics | | 2007 | 626 | 1,041 |
