Scientific article
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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

Published inJournal of Clinical Virology, vol. 141, 104908
Publication date2021
Abstract

Metagenomic sequencing is increasingly being used in clinical settings for difficult to diagnose cases. The performance of viral metagenomic protocols relies to a large extent on the bioinformatic analysis. In this study, the European Society for Clinical Virology (ESCV) Network on NGS (ENNGS) initiated a benchmark of metagenomic pipelines currently used in clinical virological laboratories.

Keywords
  • Benchmark
  • Bioinformatic pipelines
  • Viral metagenomics
Citation (ISO format)
DE VRIES, Jutte J C et al. Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples. In: Journal of Clinical Virology, 2021, vol. 141, p. 104908. doi: 10.1016/j.jcv.2021.104908
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Article (Published version)
Identifiers
Journal ISSN1386-6532
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Technical informations

Creation21/09/2021 08:38:00
First validation21/09/2021 08:38:00
Update10/02/2026 08:15:31
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