| Rapid and sensitive protein complex alignment with Foldseek-Multimer | Nature methods |  | | 2025 | 25 | 593 |
|
| An atlas of protein homo-oligomerization across domains of life | Cell | | | 2024 | 148 | 85 |
|
| CC+ : A searchable database of validated coiled coils in PDB structures and AlphaFold2 models | Protein science | | | 2023 | 112 | 58 |
|
| Mesoscale molecular assembly is favored by the active, crowded cytoplasm | bioRxiv | | | 2023 | 82 | 148 |
|
| Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study | Proteomics |  | | 2023 | 125 | 0 |
|
| A unified statistical potential reveals that amino acid stickiness governs nonspecific recruitment of client proteins into condensates | Protein science | | | 2022 | 61 | 27 |
|
| QSalignWeb: A Server to Predict and Analyze Protein Quaternary Structure | Frontiers in molecular biosciences | | | 2022 | 56 | 325 |
|
| PDBe-KB: collaboratively defining the biological context of structural data | Nucleic acids research | | | 2022 | 79 | 236 |
|
| How gene duplication diversifies the landscape of protein oligomeric state and function | Current opinion in genetics & development | | | 2022 | 99 | 156 |
|
| Mutant libraries reveal negative design shielding proteins from supramolecular self-assembly and relocalization in cells | Proceedings of the National Academy of Sciences of the United States of America | | | 2022 | 80 | 28 |
|
| Molecular and environmental determinants of biomolecular condensate formation | Nature chemical biology | | | 2022 | 95 | 0 |
|
| The modular cell gets connected | Science | | | 2022 | 54 | 0 |
|
| Affinity and Valence Impact the Extent and Symmetry of Phase Separation of Multivalent Proteins | Physical review letters | | | 2022 | 65 | 113 |
|
| Synthetic condensate size correlates with yeast replicative cell age | microPublication biology | | | 2022 | 62 | 18 |
|
| Altered Protein Abundance and Localization Inferred from Sites of Alternative Modification by Ubiquitin and SUMO | Journal of Molecular Biology | | | 2021 | 69 | 0 |
|
| “Structuromics”: another step toward a holistic view of the cell | Cell | | | 2021 | 62 | 132 |
|
| Abundance Imparts Evolutionary Constraints of Similar Magnitude on the Buried, Surface, and Disordered Regions of Proteins | Frontiers in molecular biosciences | | | 2021 | 48 | 57 |
|
| PDB-wide identification of physiological hetero-oligomeric assemblies based on conserved quaternary structure geometry | Structure | | | 2021 | 67 | 30 |
|
| Proteomic analysis reveals the direct recruitment of intrinsically disordered regions to stress granules in S. cerevisiae | Journal of cell science | | | 2020 | 48 | 0 |
|
| Not Going with the Flow: How Cells Adapt Internal Physics | Cell | | | 2020 | 50 | 20 |
|
| PDBe-KB: a community-driven resource for structural and functional annotations | Nucleic acids research | | | 2020 | 69 | 31 |
|
| Designer protein assemblies with tunable phase diagrams in living cells | Nature chemical biology | | | 2020 | 66 | 0 |
|
| Infinite Assembly of Folded Proteins in Evolution, Disease, and Engineering | Angewandte Chemie | | | 2019 | 59 | 25 |
|
| Protein Abundance Biases the Amino Acid Composition of Disordered Regions to Minimize Non-functional Interactions | Journal of Molecular Biology | | | 2019 | 59 | 95 |
|
| Geometric description of self-interaction potential in symmetric protein complexes | Scientific data | | | 2019 | 54 | 26 |
|
| Evolthon: A community endeavor to evolve lab evolution | PLoS biology | | | 2019 | 75 | 42 |
|
| YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries | Nucleic acids research | | | 2019 | 96 | 72 |
|
| Pooled clone collections by multiplexed CRISPR-Cas12a-assisted gene tagging in yeast | Nature communications | | | 2019 | 59 | 49 |
|
| Genome-wide C-SWAT library for high-throughput yeast genome tagging | Nature methods | | | 2018 | 70 | 0 |
|
| Inferring and Using Protein Quaternary Structure Information from Crystallographic Data | Methods in molecular biology | | | 2018 | 54 | 0 |
|
| Genome-wide SWAp-Tag yeast libraries for proteome exploration | Nature methods | | | 2018 | 66 | 0 |
|
| Proteins evolve on the edge of supramolecular self-assembly | Nature | | | 2017 | 62 | 0 |
|
| PDB-wide identification of biological assemblies from conserved quaternary structure geometry | Nature methods | | | 2017 | 59 | 0 |
|
| Exhaustive search of linear information encoding protein-peptide recognition | PLoS computational biology | | | 2017 | 57 | 35 |
|
| Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein–Protein Interactions in Living Cells | Cold Spring Harbor protocols | | | 2016 | 52 | 0 |
|
| Evolution of domain–peptide interactions to coadapt specificity and affinity to functional diversity | Proceedings of the National Academy of Sciences of the United States of America | | | 2016 | 52 | 275 |
|
| The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein–Protein Interactions | Cold Spring Harbor protocols | | | 2016 | 62 | 645 |
|
| Young phosphorylation is functionally silent | Science | | | 2016 | 52 | 0 |
|
| Symmetry Breaking in Homo-Oligomers: The Curious Case of Mega-Hemocyanin | Structure | | | 2015 | 53 | 66 |
|
| Decoding a neural circuit controlling global animal state in c. elegans | eLife | | | 2015 | 51 | 83 |
|
| Fast and Accurate Discovery of Degenerate Linear Motifs in Protein Sequences | PloS one | | | 2014 | 75 | 148 |
|
| High-Resolution Mapping of Protein Concentration Reveals Principles of Proteome Architecture and Adaptation | Cell reports | | | 2014 | 66 | 111 |
|
| Different subunits belonging to the same protein complex often exhibit discordant expression levels and evolutionary properties | Current opinion in structural biology | | | 2014 | 41 | 40 |
|
| Extracting Insight from Noisy Cellular Networks | Cell | | | 2013 | 63 | 107 |
|
