| Interleukin-18 binding protein deficiency results in gut microbiota dysbiosis and aggravated diet-induced MASH in mice | JHEP reports |  | | 2026 | 40 | 43 |
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| Extensively drug-resistant Haemophilus influenzae isolated in Geneva, Switzerland | European journal of clinical microbiology & infectious diseases | | | 2025 | 37 | 251 |
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| Microbiota of healthy dental pulps under the omics loupe | International journal of molecular sciences | | | 2025 | 86 | 230 |
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| Gut microbiota differs between ICU patients admitted for cardiac arrest and other causes : a secondary, propensity-matched cohort analysis | Intensive care medicine experimental | | | 2025 | 14 | 175 |
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| Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves | Frontiers in cellular and infection microbiology | | | 2025 | 15 | 21 |
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| Role of viral coinfection in post-pandemic invasive Group A streptococcal infections in adults, a nation-wide cohort study (iGASWISS) | European journal of clinical microbiology & infectious diseases | | | 2025 | 27 | 170 |
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| Primary meningococcal arthritis by a nonencapsulated Neisseria meningitidis strain | Clinical microbiology and infection |  | | 2025 | 10 | 0 |
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| Early reduction in gut microbiota diversity in critically ill patients is associated with mortality | Annals of intensive care | | | 2024 | 42 | 169 |
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| Identification of a short sequence motif in the influenza A virus pathogenicity factor PB1-F2 required for inhibition of human NLRP3 | Journal of virology | | | 2024 | 259 | 252 |
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| Gut microbiota associations with chronic kidney disease : insights into nutritional and inflammatory parameters | Frontiers in microbiology | | | 2024 | 130 | 163 |
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| Regional spread of an atypical ESBL-producing Escherichia coli ST131H89 clone among different human and environmental reservoirs in Western Switzerland | Antimicrobial agents and chemotherapy | | | 2024 | 130 | 330 |
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| Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplexed PCR panel | Clinical microbiology and infection | | | 2023 | 96 | 0 |
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| Could daily changes in respiratory microbiota help predicting early Staphylococcus aureus ventilator-associated pneumonia ? | Intensive care medicine experimental | | | 2023 | 133 | 87 |
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| Postpartum septic arthritis of pubic symphysis due to Sneathia sanguinegens, Sneathia vaginalis, and Mageeibacillus indolicus : Contribution of clinicalmetagenomics | New microbes and new infections | | | 2023 | 257 | 234 |
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| Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis Strain | Microbiology resource announcements | | | 2023 | 96 | 153 |
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| Mycoplasma genitalium Endocarditis in Prosthetic Aortic Valve | Emerging infectious diseases | | | 2023 | 110 | 110 |
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| Contribution of Clinical Metagenomics to the Diagnosis of Bone and Joint Infections | Frontiers in microbiology | | | 2022 | 124 | 154 |
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| Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing | ISME communications | | | 2022 | 92 | 290 |
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| Changes in the gut bacterial communities in colon cancer surgery patients: an observational study | Gut pathogens | | | 2022 | 242 | 219 |
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| Oral dysbiosis and inflammation in Parkinson's disease | Journal of Parkinson's Disease | | | 2021 | 372 | 1,251 |
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| Epidemiology of ESBL-producing Escherichia coli from repeated prevalence studies over 11 years in a long-term-care facility | Antimicrobial resistance and infection control | | | 2021 | 225 | 259 |
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| Gut barrier and microbiota changes with glycine and branched‐chain amino acid supplementation in chronic haemodialysis patients | Journal of cachexia, sarcopenia and muscle | | | 2021 | 415 | 429 |
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| Case Report: About a Case of Hyperammonemia Syndrome Following Lung Transplantation: Could Metagenomic Next-Generation Sequencing Improve the Clinical Management? | Frontiers in Medicine | | | 2021 | 212 | 454 |
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| Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case report | International journal of molecular sciences | | | 2021 | 221 | 224 |
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| Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot Study | Frontiers in cellular and infection microbiology | | | 2021 | 349 | 199 |
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| Hydrogen Peroxide Affects Growth of S. aureus Through Downregulation of Genes Involved in Pyrimidine Biosynthesis | Frontiers in immunology | | | 2021 | 223 | 184 |
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| Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized Trial | Microorganisms | | | 2020 | 447 | 266 |
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| Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy | Frontiers in Medicine | | | 2020 | 395 | 184 |
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| Septic shock caused by Capnocytophaga canis after a cat scratch | European Journal of Clinical Microbiology & Infectious Diseases | | | 2020 | 205 | 0 |
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| The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient diet | Translational Research | | | 2020 | 571 | 368 |
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| Changes in microbiota profiles after prolonged frozen storage of stool suspensions | Frontiers in Cellular and Infection Microbiology | | | 2020 | 404 | 271 |
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| Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpoint | BMC Infectious Diseases | | | 2019 | 616 | 219 |
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| Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis | Frontiers in Medicine | | | 2019 | 395 | 295 |
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| Identification of respiratory microbiota markers in ventilator-associated pneumonia | Intensive Care Medicine | | | 2019 | 379 | 206 |
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| Genomic epidemiology of Neisseria meningitidis serogroup W in Switzerland between 2010 and 2016 | Journal of Infection | | | 2019 | 356 | 0 |
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| Disrupting myelin-specific Th17 cell gut homing confers protection in an adoptive transfer experimental autoimmune encephalomyelitis | Cell Reports | | | 2019 | 451 | 372 |
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| Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical Metagenomics | Frontiers in Cardiovascular Medicine | | | 2019 | 369 | 187 |
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| The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant enterobacteriaceae after traveling to tropical regions | Gut microbes | | | 2019 | 311 | 419 |
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| Molecular characterization of fluoroquinolones, macrolides, and imipenem resistance in Haemophilus influenzae: analysis of the mutations in QRDRs and assessment of the extent of the AcrAB-TolC-mediated resistance | European Journal of Clinical Microbiology & Infectious Diseases | | | 2018 | 405 | 0 |
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| Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements | Cell Metabolism | | | 2018 | 620 | 487 |
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| Root microbiota in primary and secondary apical periodontitis | Frontiers in Microbiology | | | 2018 | 659 | 515 |
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| When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing | Frontiers in Microbiology | | | 2018 | 524 | 319 |
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| The farming environment protects mice from allergen-induced skin contact hypersensitivity | Clinical and experimental allergy | | | 2017 | 582 | 3 |
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| Unexpected persistence of extended-spectrum β-lactamase-producing Enterobacteriaceae in the faecal microbiota of hospitalised patients treated with imipenem | International Journal of Antimicrobial Agents | | | 2017 | 567 | 1 |
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| Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing | International Journal of Molecular Sciences | | | 2017 | 477 | 441 |
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| A Potential New Human Pathogen Belonging to Helicobacter Genus, Identified in a Bloodstream Infection | Frontiers in Microbiology | | | 2017 | 355 | 148 |
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| Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted Patients | Frontiers in microbiology | | | 2016 | 600 | 568 |
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| Impact of Hypocaloric Hyperproteic Diet on Gut Microbiota in Overweight or Obese Patients with Nonalcoholic Fatty Liver Disease: A Pilot Study | Digestive diseases and sciences | | | 2016 | 651 | 2 |
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| Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR | BMC Microbiology | | | 2016 | 507 | 283 |
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| Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota | Clinical microbiology and infection | | | 2015 | 759 | 0 |
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| Mapping axillary microbiota responsible for body odours using a culture-independent approach | Microbiome | | | 2015 | 620 | 815 |
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| Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity | The ISME journal | | | 2014 | 638 | 546 |
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| A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis | BMC genomics | | | 2014 | 713 | 396 |
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| Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients | Frontiers in cellular and infection microbiology | | | 2014 | 739 | 307 |
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| Comparison of DNA extraction methods in analysis of salivary bacterial communities | PloS one | | | 2013 | 781 | 412 |
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| Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media | Clinical microbiology and infection | | | 2013 | 734 | 393 |
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| Analysis of the salivary microbiome using culture-independent techniques | Journal of clinical bioinformatics | | | 2012 | 750 | 326 |
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