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Early reduction in gut microbiota diversity in critically ill patients is associated with mortalityAnnals of intensive care
accessLevelPublic
2024 4 1
Identification of a short sequence motif in the influenza A virus pathogenicity factor PB1-F2 required for inhibition of human NLRP3Journal of virology
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2024 173 51
Gut microbiota associations with chronic kidney disease : insights into nutritional and inflammatory parametersFrontiers in microbiology
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2024 62 90
Regional spread of an atypical ESBL-producing Escherichia coli ST131H89 clone among different human and environmental reservoirs in Western SwitzerlandAntimicrobial agents and chemotherapy
accessLevelPublic
2024 88 88
Acute bacterial meningitis due to Neisseria meningitidis serotype B missed by a multiplexed PCR panelClinical microbiology and infection
accessLevelRestricted
2023 64 0
Could daily changes in respiratory microbiota help predicting early Staphylococcus aureus ventilator-associated pneumonia ?Intensive care medicine experimental
accessLevelPublic
2023 68 27
Postpartum septic arthritis of pubic symphysis due to Sneathia sanguinegens, Sneathia vaginalis, and Mageeibacillus indolicus : Contribution of clinicalmetagenomicsNew microbes and new infections
accessLevelPublic
2023 200 42
Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis StrainMicrobiology resource announcements
accessLevelPublic
2023 59 27
Mycoplasma genitalium Endocarditis in Prosthetic Aortic ValveEmerging infectious diseases
accessLevelPublic
2023 65 30
Contribution of Clinical Metagenomics to the Diagnosis of Bone and Joint InfectionsFrontiers in microbiology
accessLevelPublic
2022 59 60
Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencingISME communications
accessLevelPublic
2022 68 94
Changes in the gut bacterial communities in colon cancer surgery patients: an observational studyGut pathogens
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2022 190 79
Oral dysbiosis and inflammation in Parkinson's diseaseJournal of Parkinson's Disease
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2021 266 652
Epidemiology of ESBL-producing Escherichia coli from repeated prevalence studies over 11 years in a long-term-care facilityAntimicrobial resistance and infection control
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2021 172 62
Gut barrier and microbiota changes with glycine and branched‐chain amino acid supplementation in chronic haemodialysis patientsJournal of cachexia, sarcopenia and muscle
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2021 321 183
Case Report: About a Case of Hyperammonemia Syndrome Following Lung Transplantation: Could Metagenomic Next-Generation Sequencing Improve the Clinical Management?Frontiers in Medicine
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2021 157 154
Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case reportInternational journal of molecular sciences
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2021 176 111
Metataxonomic and Metabolic Impact of Fecal Microbiota Transplantation From Patients With Pancreatic Cancer Into Germ-Free Mice: A Pilot StudyFrontiers in cellular and infection microbiology
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2021 273 93
Hydrogen Peroxide Affects Growth of S. aureus Through Downregulation of Genes Involved in Pyrimidine BiosynthesisFrontiers in immunology
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2021 175 75
Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized TrialMicroorganisms
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2020 398 222
Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic StrategyFrontiers in Medicine
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2020 325 125
Septic shock caused by Capnocytophaga canis after a cat scratchEuropean Journal of Clinical Microbiology & Infectious Diseases
accessLevelRestricted
2020 166 0
The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient dietTranslational Research
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2020 458 211
Changes in microbiota profiles after prolonged frozen storage of stool suspensionsFrontiers in Cellular and Infection Microbiology
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2020 355 190
Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpointBMC Infectious Diseases
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2019 437 155
Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative EndocarditisFrontiers in Medicine
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2019 352 208
Identification of respiratory microbiota markers in ventilator-associated pneumoniaIntensive Care Medicine
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2019 317 142
Genomic epidemiology of Neisseria meningitidis serogroup W in Switzerland between 2010 and 2016Journal of Infection
accessLevelRestricted
2019 307 0
Disrupting myelin-specific Th17 cell gut homing confers protection in an adoptive transfer experimental autoimmune encephalomyelitisCell Reports
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2019 363 178
Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical MetagenomicsFrontiers in Cardiovascular Medicine
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2019 327 132
The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant enterobacteriaceae after traveling to tropical regionsGut microbes
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2019 267 156
Molecular characterization of fluoroquinolones, macrolides, and imipenem resistance in Haemophilus influenzae: analysis of the mutations in QRDRs and assessment of the extent of the AcrAB-TolC-mediated resistanceEuropean Journal of Clinical Microbiology & Infectious Diseases
accessLevelRestricted
2018 324 0
Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic ImprovementsCell Metabolism
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2018 565 356
Root microbiota in primary and secondary apical periodontitisFrontiers in Microbiology
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2018 589 215
When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation SequencingFrontiers in Microbiology
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2018 463 176
The farming environment protects mice from allergen-induced skin contact hypersensitivityClinical and experimental allergy
accessLevelRestricted
2017 531 2
Unexpected persistence of extended-spectrum β-lactamase-producing Enterobacteriaceae in the faecal microbiota of hospitalised patients treated with imipenemInternational Journal of Antimicrobial Agents
accessLevelRestricted
2017 519 1
Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation SequencingInternational Journal of Molecular Sciences
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2017 435 211
A Potential New Human Pathogen Belonging to Helicobacter Genus, Identified in a Bloodstream InfectionFrontiers in Microbiology
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2017 301 124
Microbial Communities of Conducting and Respiratory Zones of Lung-Transplanted PatientsFrontiers in microbiology
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2016 542 453
Impact of Hypocaloric Hyperproteic Diet on Gut Microbiota in Overweight or Obese Patients with Nonalcoholic Fatty Liver Disease: A Pilot StudyDigestive diseases and sciences
accessLevelRestricted
2016 609 2
Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCRBMC Microbiology
accessLevelPublic
2016 473 185
Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiotaClinical microbiology and infection
2015 706 0
Mapping axillary microbiota responsible for body odours using a culture-independent approachMicrobiome
accessLevelPublic
2015 552 239
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesityThe ISME journal
accessLevelPublic
2014 590 432
A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonisBMC genomics
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2014 669 323
Challenges in the culture-independent analysis of oral and respiratory samples from intubated patientsFrontiers in cellular and infection microbiology
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2014 685 248
Comparison of DNA extraction methods in analysis of salivary bacterial communitiesPloS one
accessLevelPublic
2013 680 305
Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis mediaClinical microbiology and infection
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2013 687 337
Analysis of the salivary microbiome using culture-independent techniquesJournal of clinical bioinformatics
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2012 711 282
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