| OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity | Nucleic acids research |  | | 2023 | 114 | 1,226 |
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| OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs | Nucleic Acids Research | | | 2019 | 493 | 743 |
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| ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages | Environmental Microbiology |  | | 2018 | 349 | 0 |
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| OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs | Nucleic acids research | | | 2017 | 1,023 | 359 |
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| BUSCO applications from quality assessments to gene prediction and phylogenomics | Molecular Biology and Evolution | | | 2017 | 527 | 0 |
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| OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software | Nucleic acids research | | | 2015 | 717 | 601 |
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| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs | Bioinformatics | | | 2015 | 760 | 0 |
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| The common marmoset genome provides insight into primate biology and evolution | Nature genetics | | | 2014 | 565 | 326 |
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| Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality | Genome research | | | 2013 | 687 | 1 |
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| OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs | Nucleic acids research | | | 2013 | 787 | 0 |
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| Toward community standards in the quest for orthologs | Bioinformatics | | | 2012 | 544 | 0 |
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| The ecoresponsive genome of Daphnia pulex | Science | | | 2011 | 1,039 | 1 |
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| OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 | Nucleic acids research | | | 2011 | 690 | 0 |
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| Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi | Genome biology and evolution | | | 2011 | 687 | 0 |
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| Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle | Proceedings of the National Academy of Sciences of the United States of America | | | 2010 | 589 | 1 |
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| Comparative Genome Analysis | Bioinformatics: A Swiss Perspective | | | 2009 | 1,049 | 0 |
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| The bovine lactation genome: insights into the evolution of mammalian milk | GenomeBiology.com | | | 2009 | 674 | 370 |
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| miROrtho: computational survey of microRNA genes | Nucleic acids research | | | 2009 | 714 | 330 |
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| Mapping of small RNAs in the human ENCODE regions | American journal of human genetics | | | 2008 | 626 | 0 |
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| OrthoDB: the hierarchical catalog of eukaryotic orthologs | Nucleic acids research | | | 2008 | 675 | 577 |
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| AnoEST: toward A. gambiae functional genomics | Genome research | | | 2005 | 686 | 440 |
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| Interactive InterPro-based comparisons of proteins in whole genomes | Bioinformatics | | | 2002 | 649 | 0 |
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| CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins | Nucleic acids research | | | 2001 | 697 | 0 |
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| Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes | Nucleic acids research | | | 2001 | 575 | 0 |
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