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Title

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins

Authors
Fleischmann, Wolfgang
Apweiler, Rolf
Published in Nucleic Acids Research. 2001, vol. 29, no. 1, p. 33-6
Abstract The CluSTr (Clusters of SWISS-PROT and TrEMBL proteins) database offers an automatic classification of SWISS-PROT and TrEMBL proteins into groups of related proteins. The clustering is based on analysis of all pairwise comparisons between protein sequences. Analysis has been carried out for different levels of protein similarity, yielding a hierarchical organisation of clusters. The database provides links to InterPro, which integrates information on protein families, domains and functional sites from PROSITE, PRINTS, Pfam and ProDom. Links to the InterPro graphical interface allow users to see at a glance whether proteins from the cluster share particular functional sites. CluSTr also provides cross-references to HSSP and PDB. The database is available for querying and browsing at http://www.ebi.ac.uk/clustr.
Keywords AnimalsCarrier Proteins/geneticsDatabases, FactualHumansInformation ServicesInternetProteins/geneticsSequence AlignmentSodium/metabolism
Identifiers
PMID: 11125042
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KRIVENTSEVA, Evgenia et al. CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. In: Nucleic Acids Research, 2001, vol. 29, n° 1, p. 33-6. https://archive-ouverte.unige.ch/unige:30565

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Deposited on : 2013-10-22

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