| Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves | Frontiers in cellular and infection microbiology |  | | 2025 | 15 | 21 |
|
| A metagenomics method for the quantitative detection of bacterial pathogens causing hospital-associated and ventilator-associated pneumonia | Microbiology spectrum | | | 2023 | 91 | 139 |
|
| Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing | ISME communications | | | 2022 | 92 | 290 |
|
| Changes in the gut bacterial communities in colon cancer surgery patients: an observational study | Gut pathogens | | | 2022 | 242 | 219 |
|
| Oral dysbiosis and inflammation in Parkinson's disease | Journal of Parkinson's Disease | | | 2021 | 372 | 1,251 |
|
| Staphylococcus aureus Transcriptome Data and Metabolic Modelling Investigate the Interplay of Ser/Thr Kinase PknB, Its Phosphatase Stp, the glmR/yvcK Regulon and the cdaA Operon for Metabolic Adaptation | Microorganisms | | | 2021 | 228 | 124 |
|
| Mycobacterium chelonae infection identified by metagenomic next-generation sequencing as the probable cause of acute contained rupture of a biological composite graft—a case report | International journal of molecular sciences | | | 2021 | 221 | 224 |
|
| Metagenomic Characterization of Gut Microbiota of Carriers of Extended-Spectrum Beta-Lactamase or Carbapenemase-Producing Enterobacteriaceae Following Treatment with Oral Antibiotics and Fecal Microbiota Transplantation: Results from a Multicenter Randomized Trial | Microorganisms | | | 2020 | 447 | 266 |
|
| Second Periprosthetic Joint Infection Caused by Streptococcus dysgalactiae: How Genomic Sequencing Can Help Defining the Best Therapeutic Strategy | Frontiers in Medicine | | | 2020 | 395 | 184 |
|
| Septic shock caused by Capnocytophaga canis after a cat scratch | European Journal of Clinical Microbiology & Infectious Diseases |  | | 2020 | 205 | 0 |
|
| Changes in microbiota profiles after prolonged frozen storage of stool suspensions | Frontiers in Cellular and Infection Microbiology | | | 2020 | 404 | 271 |
|
| From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective | Clinical Microbiology and Infection | | | 2020 | 414 | 1 |
|
| Listeria monocytogenes infectious periaortitis: a case report from the infectious disease standpoint | BMC Infectious Diseases | | | 2019 | 616 | 219 |
|
| Next-Generation Sequencing for the Diagnosis of Challenging Culture-Negative Endocarditis | Frontiers in Medicine | | | 2019 | 395 | 295 |
|
| Temperate prophages increase bacterial adhesin expression and virulence in an experimental model of endocarditis due to staphylococcus aureus from the cc398 lineage | Frontiers in Microbiology | | | 2019 | 291 | 167 |
|
| Identification of respiratory microbiota markers in ventilator-associated pneumonia | Intensive Care Medicine | | | 2019 | 379 | 206 |
|
| Genomic epidemiology of Neisseria meningitidis serogroup W in Switzerland between 2010 and 2016 | Journal of Infection | | | 2019 | 356 | 0 |
|
| Rare Case of Community-Acquired Endocarditis Caused by Neisseria meningitidis Assessed by Clinical Metagenomics | Frontiers in Cardiovascular Medicine | | | 2019 | 369 | 187 |
|
| The intestinal microbiota predisposes to traveler's diarrhea and to the carriage of multidrug-resistant enterobacteriaceae after traveling to tropical regions | Gut microbes | | | 2019 | 311 | 419 |
|
| Differential daptomycin resistance development in Staphylococcus aureus strains with active and mutated gra regulatory systems | International Journal of Medical Microbiology | | | 2018 | 333 | 0 |
|
| Root microbiota in primary and secondary apical periodontitis | Frontiers in Microbiology | | | 2018 | 659 | 515 |
|
| When Bacterial Culture Fails, Metagenomics Can Help: A Case of Chronic Hepatic Brucelloma Assessed by Next-Generation Sequencing | Frontiers in Microbiology | | | 2018 | 524 | 319 |
|
| In vivo selection of a multidrug-resistant Aeromonas salmonicida during medicinal leech therapy | New Microbes and New Infections | | | 2018 | 1,575 | 0 |
|
| Clinical metagenomics of bone and joint infections: a proof of concept study | Scientific Reports | | | 2017 | 618 | 506 |
|
| Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing | International Journal of Molecular Sciences | | | 2017 | 477 | 440 |
|
| Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR | BMC Microbiology | | | 2016 | 507 | 283 |
|
| GdpS contributes to Staphylococcus aureus biofilm formation by regulation of eDNA release | International journal of medical microbiology | | | 2014 | 675 | 2 |
|
| Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients | Frontiers in cellular and infection microbiology | | | 2014 | 739 | 307 |
|
| Noma affected children from niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments | PLoS neglected tropical diseases | | | 2014 | 710 | 396 |
|
| Microarray Analysis of Microbiota of Gingival Lesions in Noma Patients | PLoS neglected tropical diseases | | | 2013 | 733 | 1,130 |
|
| The CshA DEAD-box RNA helicase is important for quorum sensing control in Staphylococcus aureus | RNA biology | | | 2013 | 757 | 560 |
|
| Comparison of DNA extraction methods in analysis of salivary bacterial communities | PloS one | | | 2013 | 781 | 412 |
|
| Analysis of prophages harbored by the human-adapted subpopulation of Staphylococcus aureus CC398 | Infection, genetics and evolution | | | 2013 | 653 | 781 |
|
| Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media | Clinical microbiology and infection | | | 2013 | 734 | 393 |
|
| Blue light-mediated inactivation of Enterococcus faecalis in vitro | Photodiagnosis and photodynamic therapy | | | 2013 | 683 | 9 |
|
| Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach | The journal of antimicrobial chemotherapy | | | 2011 | 654 | 0 |
|
| Molecular and epidemiological evaluation of strain replacement in patients previously harboring gentamicin-resistant MRSA | Journal of clinical microbiology | | | 2011 | 556 | 0 |
|
| Methicillin-susceptible ST398 Staphylococcus aureus responsible for bloodstream infections: an emerging human-adapted subclone? | PloS one | | | 2011 | 689 | 361 |
|
| Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue | Frontiers in microbiology | | | 2011 | 602 | 357 |
|
| The σB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus | Journal of bacteriology | | | 2011 | 617 | 0 |
|
| Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice | Diabetes | | | 2011 | 689 | 0 |
|
| Screening for staphylococcal superantigen genes shows no correlation with the presence or the severity of chronic rhinosinusitis and nasal polyposis | PloS one | | | 2010 | 738 | 369 |
|
| Comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species level | Journal of clinical microbiology | | | 2010 | 661 | 0 |
|
| Inactivation of the Ecs ABC transporter of Staphylococcus aureus attenuates virulence by altering composition and function of bacterial wall | PloS one | | | 2010 | 644 | 413 |
|
