Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples

Article Article scientifique Article Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples eng 2021 author de Vries Jutte J C author Brown Julianne R author Fischer Nicole author Sidorov Igor A author Morfopoulou Sofia author Huang Jiabin author Munnink Bas B Oude author Sayiner Arzu author Bulgurcu Alihan author Rodriguez Castillo Christophe Alexandre 761894 author Gricourt Guillaume author Keyaerts Els author Beller Leen author Bachofen Claudia author Kubacki Jakub author Cordey Samuel 507357 author Laubscher Florian 748134 author Schmitz Dennis author Beer Martin author Hoeper Dirk author Huber Michael author Kufner Verena author Zaheri Maryam 681405 author Lebrand Aitana 860986 author Papa Anna author van Boheemen Sander author Kroes Aloys C M author Breuer Judith author Lopez-Labrador F Xavier author Claas Eric C J 104908 10.1016/j.jcv.2021.104908 34273858 1386-6532 Metagenomic sequencing is increasingly being used in clinical settings for difficult to diagnose cases. The performance of viral metagenomic protocols relies to a large extent on the bioinformatic analysis. In this study, the European Society for Clinical Virology (ESCV) Network on NGS (ENNGS) initiated a benchmark of metagenomic pipelines currently used in clinical virological laboratories. Benchmark Bioinformatic pipelines Viral metagenomics Dewey 616 56 Département de médecine 221 false 400 Virologie clinique 668 Journal of Clinical Virology 141 bea3ef09-8eb7-43fa-8d71-313b58a27ebd Article (Published version) Public JdeVries_Benchmark_thirteen_bioinformatic_pipelines_for_metagenomic_virus_diagnostics_using_datasets_clinical_samples.pdf 1223378 application/pdf CC BY openAccess Faculté de médecine / Section de médecine clinique / Département de médecine

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Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples	Journal of Clinical Virology			2021	277	405

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Rodriguez Castillo, Christophe Alexandre