| Gender and geographical bias in the editorial decision-making process of biomedical journals : a case-control study | BMJ evidence-based medicine |  | | 2024 | 40 | 137 |
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| Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning | Studies in health technology and informatics | | | 2022 | 285 | 241 |
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| Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature | Studies in health technology and informatics | | | 2022 | 251 | 180 |
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| Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service | Studies in health technology and informatics | | | 2022 | 208 | 242 |
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| Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora | Frontiers in research metrics and analytics | | | 2021 | 340 | 222 |
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| An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents | Proceedings of CLEF (Conference and Labs of the Evaluation Forum) 2020 Working Notes | | | 2020 | 331 | 663 |
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| Named entity recognition in chemical patents using ensemble of contextual language models | Proceedings of CLEF (Conference and Labs of the Evaluation Forum) 2020 Working Notes | | | 2020 | 176 | 605 |
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| BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models | Proceedings of the 2020 EMNLP Workshop W-NUT: The Sixth Workshop on Noisy User-generated Text | | | 2020 | 374 | 224 |
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| UPCLASS: a deep learning-based classifier for UniProtKB entry publications | Database | | | 2020 | 283 | 166 |
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| Contextualized French Language Models for Biomedical Named Entity Recognition | Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 33e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues (RÉCITAL, 22e édition). Atelier DÉfi Fouille de Textes | | | 2020 | 409 | 745 |
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| SIB Text Mining at TREC 2019 Deep Learning Track: Working Note | The Twenty-Eighth Text REtrieval Conference (TREC 2019) Proceedings | | | 2019 | 234 | 356 |
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| A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts | Proceedings of CLEF (Conference and Labs of the Evaluation Forum) 2019 Working Notes | | | 2019 | 348 | 786 |
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| A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts | Proceedings of CLEF (Conference and Labs of the Evaluation Forum) 2019 Working Notes | | | 2019 | 244 | 429 |
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| Triage by ranking to support the curation of protein interactions | Database | | | 2017 | 567 | 559 |
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| Improving average ranking precision in user searches for biomedical research datasets | Database | | | 2017 | 183 | 213 |
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| neXtA5: accelerating annotation of articles via automated approaches in neXtProt | Database | | | 2016 | 608 | 318 |
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| Deep Question Answering for protein annotation | Database | | | 2015 | 609 | 1,164 |
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| Development and tuning of an original search engine for patent libraries in medicinal chemistry | BMC bioinformatics | | | 2014 | 922 | 376 |
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| Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases | Database | | | 2013 | 915 | 482 |
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| Use of controlled vocabularies to improve biomedical information retrieval tasks | Studies in health technology and informatics | | | 2013 | 771 | 428 |
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| Assisted knowledge discovery for the maintenance of clinical guidelines | PloS one | | | 2013 | 1,017 | 383 |
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| Khresmoi - multilingual semantic search of medical text and images | Studies in health technology and informatics | | | 2013 | 1,008 | 470 |
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| Utilization of ontology look-up services in information retrieval for biomedical literature | Studies in health technology and informatics | | | 2013 | 829 | 114 |
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| Der Nutzen der Schweizer Teilnahme im europäischen Projekt epSOS | Swiss Medical Informatics | | | 2013 | 282 | 297 |
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| ToxiCat: Hybrid Named Entity Recognition services to support curation of the Comparative Toxicogenomic Database | Proceedings of the Fourth BioCreative Challenge Evaluation Workshop | | | 2013 | 762 | 224 |
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| An advanced search engine for patent analytics in medicinal chemistry | Studies in health technology and informatics | | | 2012 | 801 | 183 |
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| Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database | Database | | | 2012 | 750 | 432 |
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| Classification and prioritization of biomedical literature for the comparative toxicogenomics database | Studies in health technology and informatics | | | 2012 | 1,565 | 1,091 |
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| A user-friendly tool for medical-related patent retrieval | Studies in health technology and informatics |  | | 2012 | 851 | 0 |
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| Assister la création de guides de bonnes pratiques par des techniques de recherche d'information | Swiss medical informatics | | | 2012 | 866 | 0 |
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| Development of a text search engine for medicinal chemistry patents | EMBnet journal | | | 2012 | 800 | 0 |
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| PEACE: Personal Enhanced Acquisition for Citizen's Environment | Swiss medical informatics | | | 2012 | 846 | 470 |
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| Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation | JMIR. Journal of medical internet research | | | 2012 | 892 | 0 |
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| Pathogens and gene product normalization in the biomedical literature | Studies in health technology and informatics | | | 2012 | 942 | 453 |
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| Using multimodal mining to drive clinical guidelines development | Studies in health technology and informatics | | | 2011 | 883 | 227 |
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| A cross-site antimicrobial resistance surveillance system using semantic web technologies | International Conference on Prevention & Infection Control (ICPIC 2011) | | | 2011 | 301 | 147 |
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| Interoperability driven integration of biomedical data sources | Studies in health technology and informatics | | | 2011 | 950 | 599 |
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| KART, a knowledge authoring and refinement tool for clinical guidelines development | BMC proceedings | | | 2011 | 871 | 352 |
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| Automatic medical knowledge acquisition using question-answering | Studies in health technology and informatics | | | 2009 | 762 | 224 |
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| Biomedical data management: a proposal framework | Studies in health technology and informatics | | | 2009 | 264 | 133 |
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| QA-driven guidelines generation for bacteriotherapy | AMIA ... Annual Symposium proceedings | | | 2009 | 814 | 0 |
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| Automatic medical encoding with SNOMED categories | BMC medical informatics and decision making | | | 2008 | 876 | 476 |
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| A bio-medical informatics perspective on human factors. Findings from the Yearbook 2008 Section on Human Factors | Yearbook of medical informatics | | | 2008 | 610 | 93 |
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| Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction | BMC bioinformatics | | | 2008 | 662 | 90 |
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| From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding | AMIA ... Annual Symposium proceedings | | | 2008 | 575 | 265 |
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| Introducing meta-services for biomedical information extraction | GenomeBiology.com | | | 2008 | 779 | 855 |
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| Overview of BioCreative II gene normalization | GenomeBiology.com | | | 2008 | 775 | 1,054 |
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| Mapping proteins to disease terminologies: from UniProt to MeSH | BMC bioinformatics | | | 2008 | 714 | 634 |
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