Book chapter
English

Rapid miRNA Imaging in Cells Using Fluorogenic Templated Staudinger Reaction Between PNA-Based Probes

Published inNielsen, Peter E. & Appella, Daniel H. (Ed.), Peptide Nucleic Acids : Methods and Protocols, p. 197-192
PublisherTotowa, NJ : Humana Press
Collection
  • Methods in Molecular Biology; 1050
Publication date2014
Abstract

Reactions templated by a specific nucleic acid sequence have emerged as an attractive strategy for nucleic acid sensing. The Staudinger reaction using an azide-quenched fluorophore and a phosphine is particularly well suited by virtue of its bioorthogonality and biocompatibility. The reaction is promoted by a complementary nucleic acid that aligns the phosphine with the azide-quenched fluorophore. Cellular RNAs can catalyze the Staudinger reaction and signal amplification can be achieved through multiple turnover of the template. Peptide nucleic acids (PNA) provide a convenient platform for the preparation of specific probes as they combine desirable hybridization properties, robust synthesis, ease of fluorophore conjugation, and high biochemical stability. Herein, we describe protocols for fast fluorescent detection of miRNAs in human cells with PNA-based probes via reductive unquenching of bis-azidorhodamine by trialkylphosphine.

Keywords
  • Peptide nucleic acid (PNA)
  • Imaging
  • MiRNA
  • Templated reaction
  • Pro-fluorophore
  • Rhodamine
  • Staudinger reaction
Affiliation entities Not a UNIGE publication
Citation (ISO format)
GORSKA, Katarzyna, WINSSINGER, Nicolas. Rapid miRNA Imaging in Cells Using Fluorogenic Templated Staudinger Reaction Between PNA-Based Probes. In: Peptide Nucleic Acids : Methods and Protocols. Nielsen, Peter E. & Appella, Daniel H. (Ed.). Totowa, NJ : Humana Press, 2014. p. 197–192. (Methods in Molecular Biology) doi: 10.1007/978-1-62703-553-8_15
Identifiers
ISBN978-1-62703-552-1
754views
0downloads

Technical informations

Creation29/05/2015 15:34:00
First validation29/05/2015 15:34:00
Update time14/03/2023 23:20:01
Status update14/03/2023 23:20:01
Last indexation31/10/2024 00:21:29
All rights reserved by Archive ouverte UNIGE and the University of GenevaunigeBlack