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Title

ScanProsite: a reference implementation of a PROSITE scanning tool

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Published in Applied Bioinformatics. 2002, vol. 1, no. 2, p. 107-8
Abstract Many different software tools are available publicly to scan the PROSITE database of protein families. However, none of them, to our knowledge, wholly implements the PROSITE syntax, or satisfies all the rules for scanning a pattern against a sequence. We hereby propose a strict definition of how a PROSITE pattern is to be scanned against a sequence, and provide a reference implementation of a tool to scan PROSITE patterns, rules and profiles against protein sequences.
Keywords Computational BiologyDatabases, ProteinGene Expression Profiling/statistics & numerical dataSequence Alignment/statistics & numerical dataSoftware
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PMID: 15130850
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Research groups Calipho (80)
Swiss-Prot Research Group
Swiss Institute of Bioinformatics
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GATTIKER, Alexandre, GASTEIGER, Elisabeth, BAIROCH, Amos Marc. ScanProsite: a reference implementation of a PROSITE scanning tool. In: Applied Bioinformatics, 2002, vol. 1, n° 2, p. 107-8. https://archive-ouverte.unige.ch/unige:40343

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Deposited on : 2014-09-19

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