Bairoch, Amos Marc

Title	Published in	Year	Views	Downloads
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students	Database	2021	410	738
The ABCD database: a repository for chemically defined antibodies	Nucleic Acids Research	2020	647	566
A high-stringency blueprint of the human proteome	Nature Communications	2020	372	722
Brain metastasis cell lines panel: a public resource of organotropic cell lines	Cancer Research	2020	280	0
The neXtProt knowledgebase in 2020: data, tools and usability improvements	Nucleic Acids Research	2020	520	699
The feature-viewer: a visualization tool for positional annotations on a sequence	Bioinformatics	2020	310	0
CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authentication	International Journal of Cancer	2020	503	1,663
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines	eLife	2019	417	161
Cell lines as biological models: practical steps for more reliable research	Chemical Research in Toxicology	2019	368	1
Exploring the Uncharacterized Human Proteome Using neXtProt	Journal of Proteome Research	2018	449	0
Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project	Journal of Proteome Research	2018	485	3
Kinases and Cancer	Cancers	2018	545	275
A new bioinformatics tool to help assess the significance of BRCA1 variants	Human Genomics	2018	542	267
The Cellosaurus, a Cell-Line Knowledge Resource	Journal of Biomolecular Techniques	2018	623	1,818
A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells	Stem Cell Reports	2018	588	383
The neXtProt knowledgebase on human proteins: 2017 update	Nucleic acids research	2017	560	444
Triage by ranking to support the curation of protein interactions	Database	2017	571	568
Annotation of functional impact of voltage-gated sodium channel mutations	Human mutation	2017	598	440
The missing protein landscape of human chromosomes 2 and 14: progress and current status	Journal of proteome research	2016	574	196
ICEPO: the ion channel electrophysiology ontology	Database	2016	602	298
Deep Question Answering for protein annotation	Database	2015	616	1,166
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat	Database	2015	558	333
N-terminome analysis of the human mitochondrial proteome	Proteomics	2015	612	0
The neXtProt knowledgebase on human proteins: current status	Nucleic acids research	2015	723	384
Converting neXtProt into Linked Data and nanopublications	Semantic web	2015	606	922
C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc₁ Complex Assembly and Supercomplex Stabilization	Molecular and cellular biology	2015	745	294
Key challenges for the creation and maintenance of specialist protein resources	Proteins	2015	555	136
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins	Journal of proteome research	2014	762	1,038
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression	Journal of web semantics	2014	640	0
Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful	Perspectives in science	2014	712	1,263
C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human	PloS one	2014	740	400
DERA is the human deoxyribose phosphate aldolase and is involved in stress response	Biochimica et biophysica acta. Molecular cell research	2014	747	347
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support	Nucleic acids research	2014	933	97
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17	Journal of proteome research	2013	689	0
A large-scale evaluation of computational protein function prediction	Nature methods	2013	747	1,309
neXtProt: organizing protein knowledge in the context of human proteome projects	Journal of proteome research	2013	744	0
Standard guidelines for the chromosome-centric human proteome project	Journal of proteome research	2012	668	0
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome	Nature biotechnology	2012	659	0
UniPathway: a resource for the exploration and annotation of metabolic pathways	Nucleic acids research	2012	626	823
neXtProt: a knowledge platform for human proteins	Nucleic acids research	2012	728	497
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway	PloS one	2012	635	462
Towards BioDBcore: a community-defined information specification for biological databases	Nucleic acids research	2011	563	383
ViralZone: a knowledge resource to understand virus diversity	Nucleic acids research	2011	827	964
A preliminary study on the prediction of human protein functions	Foundations on Natural and Artificial Computation: 4th International Work-conference on the Interplay Between Natural and Artificial Computation, IWINAC 2011	2011	510	0
The human proteome project: current state and future direction	Molecular & cellular proteomics	2011	733	789
PROSITE, a protein domain database for functional characterization and annotation	Nucleic acids research	2010	754	815
Animal Toxins: How is Complexity Represented in Databases?	Toxins	2010	561	524
Mass spectrometry in high-throughput proteomics: ready for the big time	Nature methods	2010	564	0
A large-scale protein-function database	Nature chemical biology	2010	636	314
OpenFluDB, a database for human and animal influenza virus	Database	2010	664	681
Infrastructure for the life sciences: design and implementation of the UniProt website	BMC bioinformatics	2009	1,048	2,681
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature	Pharmacogenetics and genomics	2009	694	2
Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands	Proteomics	2009	637	0
InterPro: the integrative protein signature database	Nucleic acids research	2009	670	193
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot	Nucleic acids research	2009	692	541
UniProtKB/Swiss-Prot manual and automated annotation of complete proteomes: the Dictyostelium discoideum case study	Bioinformatics: a Swiss Perspective	2009	547	0
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program	Journal of proteomics	2009	652	0
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens	Nucleic acids research	2009	734	269
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase	Database	2009	722	568
The impact of 3D structures on a protein knowledgebase: from proteins to systems	Structural Proteomics and its Impact on the Life Sciences	2008	606	0
Calling on a million minds for community annotation in WikiProteins	GenomeBiology.com	2008	652	1,047
The 20 years of PROSITE	Nucleic acids research	2008	617	512
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase	Human mutation	2008	724	429
UniProtKB/Swiss-Prot: new and future developments	Data Integration in the Life Sciences, Proceedings of the 5th International Workshop, DILS 2008	2008	636	0
New developments in the InterPro database	Nucleic acids research	2007	730	1,322
UniProtKB/Swiss-Prot	Methods in molecular biology	2007	770	0
Data integration in Proteomics	Proteome research: concepts, technology and applications	2007	575	0
Protein variations: resources and tools	Biomedical application of proteomics	2006	624	0
The Universal Protein Resource (UniProt): an expanding universe of protein information	Nucleic acids research	2006	725	2,854
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins	Nucleic acids research	2006	944	761
Small can be beautiful, but it remains complex!	Complexus	2006	561	0
The PROSITE database	Nucleic acids research	2006	716	675
Functionally and structurally relevant residues in PROSITE motif descriptors	Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics	2005	521	1
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase	Toxicon	2005	703	0
ProRule: a new database containing functional and structural information on PROSITE profiles	Bioinformatics	2005	732	395
Plant protein annotation in the UniProt Knowledgebase	Plant physiology	2005	559	623
InterPro, progress and status in 2005	Nucleic acids research	2005	720	40
Protein identification and analysis tools on the ExPASy server	The Proteomics Protocols Handbook	2005	1,637	0
The Universal Protein Resource (UniProt)	Nucleic acids research	2005	1,019	1,688
Protein variety and functional diversity: Swiss-Prot annotation in its biological context	Comptes rendus. Biologies	2005	650	0
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants	Human mutation	2004	622	0
IntAct: an open source molecular interaction database	Nucleic acids research	2004	738	840
Annotation of post-translational modifications in the Swiss-Prot knowledge base	Proteomics	2004	625	0
Protein sequence databases	Current opinion in chemical biology	2004	485	0
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools	Plant physiology and biochemistry	2004	636	0
Swiss-Prot: juggling between evolution and stability	Briefings in bioinformatics	2004	627	633
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins	Proteomics	2004	644	0
Post-translational modifications: a challenge for proteomics and bioinformatics	Proteomics	2004	594	141
IntEnz, the integrated relational enzyme database	Nucleic acids research	2004	750	224
UniProt: the Universal Protein knowledgebase	Nucleic acids research	2004	1,358	765
Recent improvements to the PROSITE database	Nucleic acids research	2004	616	353
ExPASy: The proteomics server for in-depth protein knowledge and analysis	Nucleic acids research	2003	1,263	643
Protein databases	Nature Encyclopedia of the Human Genome	2003	583	0
PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse	Human genetics	2003	647	0
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003	Nucleic acids research	2003	1,006	651
NEWT, a new taxonomy portal	Nucleic acids research	2003	628	124
The InterPro Database, 2003 brings increased coverage and new features	Nucleic acids research	2003	716	549
Automated annotation of microbial proteomes in SWISS-PROT	Computational biology and chemistry	2003	501	0
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification	Proteomics	2002	698	0
The application of bioinformatics to mass spectrometry	Proteomics	2002	500	0
El nuevo servidor Latinoamericano de biologia molecular de la UCB: bo.expasy.org	Acta Nova	2002	314	370
The Sulfinator: predicting tyrosine sulfation sites in protein sequences	Bioinformatics	2002	738	407
High-quality protein knowledge resource: SWISS-PROT and TrEMBL	Briefings in bioinformatics	2002	672	1,904
The PROSITE database, its status in 2002	Nucleic acids research	2002	604	212
PROSITE: a documented database using patterns and profiles as motif descriptors	Briefings in bioinformatics	2002	682	1,075
ScanProsite: a reference implementation of a PROSITE scanning tool	Applied bioinformatics	2002	1,188	465
Annotation of glycoproteins in the SWISS-PROT database	Proteomics	2001	645	0
The human proteomics initiative (HPI)	Trends in biotechnology	2001	589	0
SWISS-PROT: connecting biomolecular knowledge via a protein database	Current issues in molecular biology	2001	856	366
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al	Bioinformatics	2001	673	101
The InterPro database, an integrated documentation resource for protein families, domains and functional sites	Nucleic acids research	2001	697	1,043
Quality control in databanks for molecular biology	BioEssays	2000	570	0
InterPro--an integrated documentation resource for protein families, domains and functional sites	Bioinformatics	2000	726	508
The ENZYME database in 2000	Nucleic acids research	2000	528	780
A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae	Yeast	2000	637	0
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!	Bioinformatics	2000	656	2,587
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000	Nucleic acids research	2000	723	1,260
The 1999 SWISS-2DPAGE database update	Nucleic acids research	2000	595	448
The PROSITE database, its status in 1999	Nucleic acids research	1999	582	652
Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping	Pharmacogenetics	1999	521	0
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection	Electrophoresis	1999	606	0
Internet resources for protein identification and characterization	Microcharacterization of proteins	1999	397	0
The SWISS-2DPAGE database: what has changed during the last year	Nucleic acids research	1999	598	451
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y	Human genetics	1999	671	0
High-throughput mass spectrometric discovery of protein post-translational modifications	Journal of Molecular Biology	1999	706	1,503
A molecular scanner to automate proteomic research and to display proteome images	Analytical chemistry	1999	654	944
The ENZYME data bank in 1999	Nucleic acids research	1999	514	650
Protein identification and analysis tools in the ExPASy server	Methods in Molecular Biology	1999	450	0
Representation of functional information in the SWISS-PROT data bank	Bioinformatics	1999	508	71
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999	Nucleic acids research	1999	662	1,325
Low molecular weight proteins: a challenge for post-genomic research	Electrophoresis	1998	533	0
Multiple parameter cross-species protein identification using MultiIdent - a world-wide web accessible tool	Electrophoresis	1998	536	0
GPCRDB: an information system for G protein-coupled receptors	Nucleic acids research	1998	672	486
'98 Escherichia coli SWISS-2DPAGE database update	Electrophoresis	1998	688	2
Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number	Electrophoresis	1998	521	0
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases	Protein science	1998	560	347
Construction of the gyrB Database for the Identification and Classification of Bacteria	Genomics & Informatics	1998	595	692
Protein annotation: detective work for function prediction	Trends in genetics	1998	516	0
Protein identification with N and C-terminal sequence tags in proteome projects	Journal of Molecular Biology	1998	547	0
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998	Nucleic acids research	1998	579	570
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling	Genome research	1998	469	162
Current status of the SWISS-2DPAGE database	Nucleic acids research	1998	570	102
Sequences and topology: Predicting evolution	Current opinion in structural biology	1997	506	0
Proteome Databases	Proteome research: new frontiers in functional genomics	1997	385	0
The PROSITE database, its status in 1997	Nucleic acids research	1997	558	155
The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence	Pharmacogenetics	1997	602	0
The SWISS-PROT protein sequence database: its relevance to human molecular medical research	Journal of molecular medicine	1997	546	0
Detailed peptide characterization using PEPTIDEMASS : a World-Wide-Web-accessible tool	Electrophoresis	1997	728	0
Arac/XylS family of transcriptional regulators	Microbiology and molecular biology reviews	1997	598	1,544
Molecular basis of symbiosis between Rhizobium and legumes	Nature	1997	999	0
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL	Proceedings	1997	664	1,586
The SWISS-PROT protein sequence data bank and its supplement TrEMBL	Nucleic acids research	1997	699	769
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995	Nucleic acids research	1996	700	174
The yeast SWISS-2DPAGE database	Electrophoresis	1996	645	0
The PROSITE database, its status in 1995	Nucleic acids research	1996	554	261
Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data	Electrophoresis	1996	584	0
Updating the sequence-based classification of glycosyl hydrolases	Biochemical journal	1996	685	329
The ENZYME data bank in 1995	Nucleic acids research	1996	579	237
Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database	Electrophoresis	1996	670	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1996	616	69
Integrating two-dimensional gel databases using the Melanie II software	Trends in biochemical sciences	1996	757	0
The SWISS-PROT protein sequence data bank and its new supplement TREMBL	Nucleic acids research	1996	703	930
Go hunting in sequence databases but watch out for the traps	Trends in genetics	1996	633	0
Inside SWISS-2DPAGE database	Electrophoresis	1995	691	0
Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy	Methods of information in medicine	1995	587	0
The SWISS-PROT protein sequence data bank: current status	Nucleic acids research	1994	716	367
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server	Trends in biochemical sciences	1994	627	0
Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes	Plant molecular biology reporter	1994	619	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1994	612	44
The ENZYME data bank	Nucleic acids research	1994	659	142
PROSITE: recent developments	Nucleic acids research	1994	548	311
A novel zinc-binding motif found in two ubiquitous deaminase families	Protein science	1994	642	165
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation	ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology	1994	591	515
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis	Nucleic acids research	1994	644	250
The SWISS-PROT protein sequence data bank, recent developments	Nucleic acids research	1993	681	367
ExPASy: un système expert pour l'analyse de séquences protéiques	Technologie et Santé	1993	415	111
A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination	Research in microbiology	1993	585	0
Snake proteins and nucleic acids	Toxicon	1993	622	0
Human liver protein map: update 1993	Electrophoresis	1993	718	0
The PROSITE dictionary of sites and patterns in proteins, its current status	Nucleic acids research	1993	599	937
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities	Biochemical journal	1993	953	289
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images	Electrophoresis	1993	743	0
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2	Nature	1993	678	0
A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators	Nucleic acids research	1993	643	110
The ENZYME data bank	Nucleic acids research	1993	612	370
Electrophorèse bidimensionnelle et informatique: un outil pour le diagnostic médical?	Labolife	1993	523	212
Plasma and red blood cell protein maps: update 1993	Electrophoresis	1993	638	0
The SWISS-PROT protein sequence data bank	Nucleic acids research	1992	703	290
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1992	757	2,153
Human liver protein map: a reference database established by microsequencing and gel comparison	Electrophoresis	1992	669	0
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily	European journal of biochemistry	1992	579	0
Proto-vav and gene expression	Nature	1992	629	0
Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component	The Journal of biological chemistry	1992	594	184
The SWISS-PROT protein sequence data bank	Nucleic acids research	1991	953	653
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases	Journal of bacteriology	1991	620	654
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases	Journal of bacteriology	1991	606	287
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1991	789	764
SEQANALREF: a sequence analysis bibliographic reference databank	Computer applications in the biosciences	1991	655	311
EF-hand motifs in inositol phospholipid-specific phospholipase C	FEBS letters	1990	696	492
Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D	Biochemical journal	1990	661	610
A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank	Protein sequences & data analysis	1989	472	160
A unique signature identifies a family of zinc-dependent metallopeptidases	FEBS letters	1989	643	277
Sequence similarities in calcium-binding proteins	Nature	1988	598	0
Sequence patterns in protein kinases	Nature	1988	558	0
Using PC/GENE for protein and nucleic acid analysis	BioTechniques	1988	556	0
The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon	MGG. Molecular & general genetics	1987	685	0
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids	MGG. Molecular & general genetics	1987	650	0
Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides	Journal of chromatography	1983	731	0
Suggestion to research groups working on protein and peptide sequence	Biochemical journal	1982	646	332
Evidence for the existence of a mutated enkephalin sequence in preproenkephalin	FEBS letters	1982	640	213