Bairoch, Amos Marc

Title	Published in	Year	Views	Downloads
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students	Database	2021	367	507
The ABCD database: a repository for chemically defined antibodies	Nucleic Acids Research	2020	522	155
A high-stringency blueprint of the human proteome	Nature Communications	2020	304	150
Brain metastasis cell lines panel: a public resource of organotropic cell lines	Cancer Research	2020	240	0
The neXtProt knowledgebase in 2020: data, tools and usability improvements	Nucleic Acids Research	2020	468	219
The feature-viewer: a visualization tool for positional annotations on a sequence	Bioinformatics	2020	266	0
CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authentication	International Journal of Cancer	2020	464	447
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines	eLife	2019	371	30
Cell lines as biological models: practical steps for more reliable research	Chemical Research in Toxicology	2019	333	1
Exploring the Uncharacterized Human Proteome Using neXtProt	Journal of Proteome Research	2018	411	0
Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project	Journal of Proteome Research	2018	450	3
Kinases and Cancer	Cancers	2018	504	151
A new bioinformatics tool to help assess the significance of BRCA1 variants	Human Genomics	2018	502	213
The Cellosaurus, a Cell-Line Knowledge Resource	Journal of Biomolecular Techniques	2018	534	373
A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells	Stem Cell Reports	2018	501	288
The neXtProt knowledgebase on human proteins: 2017 update	Nucleic acids research	2017	515	312
Triage by ranking to support the curation of protein interactions	Database	2017	526	451
Annotation of functional impact of voltage-gated sodium channel mutations	Human mutation	2017	551	293
The missing protein landscape of human chromosomes 2 and 14: progress and current status	Journal of proteome research	2016	532	89
ICEPO: the ion channel electrophysiology ontology	Database	2016	562	196
Deep Question Answering for protein annotation	Database	2015	576	1,104
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat	Database	2015	513	268
N-terminome analysis of the human mitochondrial proteome	Proteomics	2015	569	0
The neXtProt knowledgebase on human proteins: current status	Nucleic acids research	2015	687	103
Converting neXtProt into Linked Data and nanopublications	Semantic web	2015	562	663
C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc₁ Complex Assembly and Supercomplex Stabilization	Molecular and cellular biology	2015	692	92
Key challenges for the creation and maintenance of specialist protein resources	Proteins	2015	506	35
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins	Journal of proteome research	2014	685	738
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression	Journal of web semantics	2014	587	0
Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful	Perspectives in science	2014	630	146
C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human	PloS one	2014	661	357
DERA is the human deoxyribose phosphate aldolase and is involved in stress response	Biochimica et biophysica acta. Molecular cell research	2014	666	189
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support	Nucleic acids research	2014	882	28
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17	Journal of proteome research	2013	611	0
A large-scale evaluation of computational protein function prediction	Nature methods	2013	662	1,031
neXtProt: organizing protein knowledge in the context of human proteome projects	Journal of proteome research	2013	688	0
Standard guidelines for the chromosome-centric human proteome project	Journal of proteome research	2012	611	0
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome	Nature biotechnology	2012	616	0
UniPathway: a resource for the exploration and annotation of metabolic pathways	Nucleic acids research	2012	550	753
neXtProt: a knowledge platform for human proteins	Nucleic acids research	2012	666	418
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway	PloS one	2012	587	408
Towards BioDBcore: a community-defined information specification for biological databases	Nucleic acids research	2011	525	349
ViralZone: a knowledge resource to understand virus diversity	Nucleic acids research	2011	747	374
A preliminary study on the prediction of human protein functions	Foundations on Natural and Artificial Computation: 4th International Work-conference on the Interplay Between Natural and Artificial Computation, IWINAC 2011	2011	469	0
The human proteome project: current state and future direction	Molecular & cellular proteomics	2011	673	673
PROSITE, a protein domain database for functional characterization and annotation	Nucleic acids research	2010	703	347
Animal Toxins: How is Complexity Represented in Databases?	Toxins	2010	520	319
Mass spectrometry in high-throughput proteomics: ready for the big time	Nature methods	2010	531	0
A large-scale protein-function database	Nature chemical biology	2010	591	269
OpenFluDB, a database for human and animal influenza virus	Database	2010	621	523
Infrastructure for the life sciences: design and implementation of the UniProt website	BMC bioinformatics	2009	987	2,620
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature	Pharmacogenetics and genomics	2009	619	2
Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands	Proteomics	2009	583	0
InterPro: the integrative protein signature database	Nucleic acids research	2009	603	89
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot	Nucleic acids research	2009	649	510
UniProtKB/Swiss-Prot manual and automated annotation of complete proteomes: the Dictyostelium discoideum case study	Bioinformatics: a Swiss Perspective	2009	504	0
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program	Journal of proteomics	2009	609	0
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens	Nucleic acids research	2009	660	134
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase	Database	2009	673	335
The impact of 3D structures on a protein knowledgebase: from proteins to systems	Structural Proteomics and its Impact on the Life Sciences	2008	567	0
Calling on a million minds for community annotation in WikiProteins	GenomeBiology.com	2008	609	1,029
The 20 years of PROSITE	Nucleic acids research	2008	567	417
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase	Human mutation	2008	658	107
UniProtKB/Swiss-Prot: new and future developments	Data Integration in the Life Sciences, Proceedings of the 5th International Workshop, DILS 2008	2008	568	0
New developments in the InterPro database	Nucleic acids research	2007	661	1,182
UniProtKB/Swiss-Prot	Methods in molecular biology	2007	681	0
Data integration in Proteomics	Proteome research: concepts, technology and applications	2007	544	0
Protein variations: resources and tools	Biomedical application of proteomics	2006	567	0
The Universal Protein Resource (UniProt): an expanding universe of protein information	Nucleic acids research	2006	666	770
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins	Nucleic acids research	2006	819	391
Small can be beautiful, but it remains complex!	Complexus	2006	526	0
The PROSITE database	Nucleic acids research	2006	655	286
Functionally and structurally relevant residues in PROSITE motif descriptors	Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics	2005	481	1
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase	Toxicon	2005	619	0
ProRule: a new database containing functional and structural information on PROSITE profiles	Bioinformatics	2005	687	197
Plant protein annotation in the UniProt Knowledgebase	Plant physiology	2005	516	178
InterPro, progress and status in 2005	Nucleic acids research	2005	672	22
Protein identification and analysis tools on the ExPASy server	The Proteomics Protocols Handbook	2005	1,450	0
The Universal Protein Resource (UniProt)	Nucleic acids research	2005	927	179
Protein variety and functional diversity: Swiss-Prot annotation in its biological context	Comptes rendus. Biologies	2005	606	0
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants	Human mutation	2004	581	0
IntAct: an open source molecular interaction database	Nucleic acids research	2004	656	56
Annotation of post-translational modifications in the Swiss-Prot knowledge base	Proteomics	2004	584	0
Protein sequence databases	Current opinion in chemical biology	2004	440	0
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools	Plant physiology and biochemistry	2004	601	0
Swiss-Prot: juggling between evolution and stability	Briefings in bioinformatics	2004	587	165
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins	Proteomics	2004	596	0
Post-translational modifications: a challenge for proteomics and bioinformatics	Proteomics	2004	557	56
IntEnz, the integrated relational enzyme database	Nucleic acids research	2004	685	75
UniProt: the Universal Protein knowledgebase	Nucleic acids research	2004	1,281	159
Recent improvements to the PROSITE database	Nucleic acids research	2004	581	234
ExPASy: The proteomics server for in-depth protein knowledge and analysis	Nucleic acids research	2003	1,100	99
Protein databases	Nature Encyclopedia of the Human Genome	2003	503	0
PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse	Human genetics	2003	597	0
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003	Nucleic acids research	2003	948	230
NEWT, a new taxonomy portal	Nucleic acids research	2003	581	43
The InterPro Database, 2003 brings increased coverage and new features	Nucleic acids research	2003	664	471
Automated annotation of microbial proteomes in SWISS-PROT	Computational biology and chemistry	2003	464	0
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification	Proteomics	2002	656	0
The application of bioinformatics to mass spectrometry	Proteomics	2002	466	0
El nuevo servidor Latinoamericano de biologia molecular de la UCB: bo.expasy.org	Acta Nova	2002	269	164
The Sulfinator: predicting tyrosine sulfation sites in protein sequences	Bioinformatics	2002	624	217
High-quality protein knowledge resource: SWISS-PROT and TrEMBL	Briefings in bioinformatics	2002	619	508
The PROSITE database, its status in 2002	Nucleic acids research	2002	554	65
PROSITE: a documented database using patterns and profiles as motif descriptors	Briefings in bioinformatics	2002	628	268
ScanProsite: a reference implementation of a PROSITE scanning tool	Applied bioinformatics	2002	1,140	157
Annotation of glycoproteins in the SWISS-PROT database	Proteomics	2001	605	0
The human proteomics initiative (HPI)	Trends in biotechnology	2001	547	0
SWISS-PROT: connecting biomolecular knowledge via a protein database	Current issues in molecular biology	2001	803	128
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al	Bioinformatics	2001	633	30
The InterPro database, an integrated documentation resource for protein families, domains and functional sites	Nucleic acids research	2001	643	120
Quality control in databanks for molecular biology	BioEssays	2000	526	0
InterPro--an integrated documentation resource for protein families, domains and functional sites	Bioinformatics	2000	668	328
The ENZYME database in 2000	Nucleic acids research	2000	492	577
A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae	Yeast	2000	593	0
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!	Bioinformatics	2000	603	560
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000	Nucleic acids research	2000	642	701
The 1999 SWISS-2DPAGE database update	Nucleic acids research	2000	527	329
The PROSITE database, its status in 1999	Nucleic acids research	1999	544	157
Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping	Pharmacogenetics	1999	452	0
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection	Electrophoresis	1999	570	0
Internet resources for protein identification and characterization	Microcharacterization of proteins	1999	362	0
The SWISS-2DPAGE database: what has changed during the last year	Nucleic acids research	1999	551	301
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y	Human genetics	1999	597	0
High-throughput mass spectrometric discovery of protein post-translational modifications	Journal of Molecular Biology	1999	644	1,026
A molecular scanner to automate proteomic research and to display proteome images	Analytical chemistry	1999	584	596
The ENZYME data bank in 1999	Nucleic acids research	1999	475	531
Protein identification and analysis tools in the ExPASy server	Methods in Molecular Biology	1999	411	0
Representation of functional information in the SWISS-PROT data bank	Bioinformatics	1999	475	16
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999	Nucleic acids research	1999	582	897
Low molecular weight proteins: a challenge for post-genomic research	Electrophoresis	1998	500	0
Multiple parameter cross-species protein identification using MultiIdent - a world-wide web accessible tool	Electrophoresis	1998	495	0
GPCRDB: an information system for G protein-coupled receptors	Nucleic acids research	1998	608	183
'98 Escherichia coli SWISS-2DPAGE database update	Electrophoresis	1998	628	2
Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number	Electrophoresis	1998	483	0
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases	Protein science	1998	517	302
Construction of the gyrB Database for the Identification and Classification of Bacteria	Genomics & Informatics	1998	528	250
Protein annotation: detective work for function prediction	Trends in genetics	1998	483	0
Protein identification with N and C-terminal sequence tags in proteome projects	Journal of Molecular Biology	1998	498	0
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998	Nucleic acids research	1998	531	353
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling	Genome research	1998	434	36
Current status of the SWISS-2DPAGE database	Nucleic acids research	1998	500	35
Sequences and topology: Predicting evolution	Current opinion in structural biology	1997	470	0
Proteome Databases	Proteome research: new frontiers in functional genomics	1997	323	0
The PROSITE database, its status in 1997	Nucleic acids research	1997	512	16
The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence	Pharmacogenetics	1997	536	0
The SWISS-PROT protein sequence database: its relevance to human molecular medical research	Journal of molecular medicine	1997	497	0
Detailed peptide characterization using PEPTIDEMASS : a World-Wide-Web-accessible tool	Electrophoresis	1997	682	0
Arac/XylS family of transcriptional regulators	Microbiology and molecular biology reviews	1997	548	186
Molecular basis of symbiosis between Rhizobium and legumes	Nature	1997	914	0
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL	Proceedings	1997	601	174
The SWISS-PROT protein sequence data bank and its supplement TrEMBL	Nucleic acids research	1997	607	172
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995	Nucleic acids research	1996	644	60
The yeast SWISS-2DPAGE database	Electrophoresis	1996	585	0
The PROSITE database, its status in 1995	Nucleic acids research	1996	518	47
Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data	Electrophoresis	1996	539	0
Updating the sequence-based classification of glycosyl hydrolases	Biochemical journal	1996	646	91
The ENZYME data bank in 1995	Nucleic acids research	1996	540	82
Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database	Electrophoresis	1996	630	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1996	579	20
Integrating two-dimensional gel databases using the Melanie II software	Trends in biochemical sciences	1996	710	0
The SWISS-PROT protein sequence data bank and its new supplement TREMBL	Nucleic acids research	1996	622	256
Go hunting in sequence databases but watch out for the traps	Trends in genetics	1996	579	0
Inside SWISS-2DPAGE database	Electrophoresis	1995	634	0
Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy	Methods of information in medicine	1995	535	0
The SWISS-PROT protein sequence data bank: current status	Nucleic acids research	1994	659	104
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server	Trends in biochemical sciences	1994	580	0
Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes	Plant molecular biology reporter	1994	585	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1994	576	14
The ENZYME data bank	Nucleic acids research	1994	615	73
PROSITE: recent developments	Nucleic acids research	1994	510	29
A novel zinc-binding motif found in two ubiquitous deaminase families	Protein science	1994	599	85
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation	ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology	1994	551	208
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis	Nucleic acids research	1994	598	133
The SWISS-PROT protein sequence data bank, recent developments	Nucleic acids research	1993	637	88
ExPASy: un système expert pour l'analyse de séquences protéiques	Technologie et Santé	1993	374	75
A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination	Research in microbiology	1993	533	0
Snake proteins and nucleic acids	Toxicon	1993	570	0
Human liver protein map: update 1993	Electrophoresis	1993	638	0
The PROSITE dictionary of sites and patterns in proteins, its current status	Nucleic acids research	1993	562	92
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities	Biochemical journal	1993	917	57
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images	Electrophoresis	1993	655	0
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2	Nature	1993	620	0
A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators	Nucleic acids research	1993	603	50
The ENZYME data bank	Nucleic acids research	1993	569	144
Electrophorèse bidimensionnelle et informatique: un outil pour le diagnostic médical?	Labolife	1993	464	137
Plasma and red blood cell protein maps: update 1993	Electrophoresis	1993	593	0
The SWISS-PROT protein sequence data bank	Nucleic acids research	1992	651	56
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1992	648	749
Human liver protein map: a reference database established by microsequencing and gel comparison	Electrophoresis	1992	622	0
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily	European journal of biochemistry	1992	547	0
Proto-vav and gene expression	Nature	1992	596	0
Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component	The Journal of biological chemistry	1992	539	80
The SWISS-PROT protein sequence data bank	Nucleic acids research	1991	852	407
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases	Journal of bacteriology	1991	572	587
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases	Journal of bacteriology	1991	561	233
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1991	659	408
SEQANALREF: a sequence analysis bibliographic reference databank	Computer applications in the biosciences	1991	623	223
EF-hand motifs in inositol phospholipid-specific phospholipase C	FEBS letters	1990	641	409
Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D	Biochemical journal	1990	612	507
A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank	Protein sequences & data analysis	1989	439	94
A unique signature identifies a family of zinc-dependent metallopeptidases	FEBS letters	1989	596	120
Sequence similarities in calcium-binding proteins	Nature	1988	564	0
Sequence patterns in protein kinases	Nature	1988	506	0
Using PC/GENE for protein and nucleic acid analysis	BioTechniques	1988	518	0
The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon	MGG. Molecular & general genetics	1987	572	0
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids	MGG. Molecular & general genetics	1987	610	0
Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides	Journal of chromatography	1983	700	0
Suggestion to research groups working on protein and peptide sequence	Biochemical journal	1982	612	284
Evidence for the existence of a mutated enkephalin sequence in preproenkephalin	FEBS letters	1982	604	115

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students

Database

2021

367

507

The ABCD database: a repository for chemically defined antibodies

Nucleic Acids Research

2020

522

155

A high-stringency blueprint of the human proteome

Nature Communications

2020

304

150

Brain metastasis cell lines panel: a public resource of organotropic cell lines

Cancer Research

2020

240

0

The neXtProt knowledgebase in 2020: data, tools and usability improvements

Nucleic Acids Research

2020

468

219

The feature-viewer: a visualization tool for positional annotations on a sequence

Bioinformatics

2020

266

0

CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authentication

International Journal of Cancer

2020

464

447

Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines

eLife

2019

371

30

Cell lines as biological models: practical steps for more reliable research

Chemical Research in Toxicology

2019

333

1

Exploring the Uncharacterized Human Proteome Using neXtProt

Journal of Proteome Research

2018

411

0

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project

Journal of Proteome Research

2018

450

3

Kinases and Cancer

Cancers

2018

504

151

A new bioinformatics tool to help assess the significance of BRCA1 variants

Human Genomics

2018

502

213

The Cellosaurus, a Cell-Line Knowledge Resource

Journal of Biomolecular Techniques

2018

534

373

A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells

Stem Cell Reports

2018

501

288

The neXtProt knowledgebase on human proteins: 2017 update

Nucleic acids research

2017

515

312

Triage by ranking to support the curation of protein interactions

Database

2017

526

451

Annotation of functional impact of voltage-gated sodium channel mutations

Human mutation

2017

551

293

The missing protein landscape of human chromosomes 2 and 14: progress and current status

Journal of proteome research

2016

532

89

ICEPO: the ion channel electrophysiology ontology

Database

2016

562

196

Deep Question Answering for protein annotation

Database

2015

576

1,104

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

Database

2015

513

268

N-terminome analysis of the human mitochondrial proteome

Proteomics

2015

569

0

The neXtProt knowledgebase on human proteins: current status

Nucleic acids research

2015

687

103

Converting neXtProt into Linked Data and nanopublications

Semantic web

2015

562

663

C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc₁ Complex Assembly and Supercomplex Stabilization

Molecular and cellular biology

2015

692

92

Key challenges for the creation and maintenance of specialist protein resources

Proteins

2015

506

35

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

Journal of proteome research

2014

685

738

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

Journal of web semantics

2014

587

0

Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful

Perspectives in science

2014

630

146

C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human

PloS one

2014

661

357

DERA is the human deoxyribose phosphate aldolase and is involved in stress response

Biochimica et biophysica acta. Molecular cell research

2014

666

189

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Nucleic acids research

2014

882

28

A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17

Journal of proteome research

2013

611

0

A large-scale evaluation of computational protein function prediction

Nature methods

2013

662

1,031

neXtProt: organizing protein knowledge in the context of human proteome projects

Journal of proteome research

2013

688

0

Standard guidelines for the chromosome-centric human proteome project

Journal of proteome research

2012

611

0

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome

Nature biotechnology

2012

616

0

UniPathway: a resource for the exploration and annotation of metabolic pathways

Nucleic acids research

2012

550

753

neXtProt: a knowledge platform for human proteins

Nucleic acids research

2012

666

418

Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway

PloS one

2012

587

408

Towards BioDBcore: a community-defined information specification for biological databases

Nucleic acids research

2011

525

349

ViralZone: a knowledge resource to understand virus diversity

Nucleic acids research

2011

747

374

A preliminary study on the prediction of human protein functions

Foundations on Natural and Artificial Computation: 4th International Work-conference on the Interplay Between Natural and Artificial Computation, IWINAC 2011

2011

469

0

The human proteome project: current state and future direction

Molecular & cellular proteomics

2011

673

PROSITE, a protein domain database for functional characterization and annotation

Nucleic acids research

2010

703

347

Animal Toxins: How is Complexity Represented in Databases?

Toxins

2010

520

319

Mass spectrometry in high-throughput proteomics: ready for the big time

Nature methods

2010

531

0

A large-scale protein-function database

Nature chemical biology

2010

591

269

OpenFluDB, a database for human and animal influenza virus

Database

2010

621

523

Infrastructure for the life sciences: design and implementation of the UniProt website

BMC bioinformatics

2009

987

2,620

Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature

Pharmacogenetics and genomics

2009

619

2

Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands

Proteomics

2009

583

0

InterPro: the integrative protein signature database

Nucleic acids research

2009

603

89

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

Nucleic acids research

2009

649

510

UniProtKB/Swiss-Prot manual and automated annotation of complete proteomes: the Dictyostelium discoideum case study

Bioinformatics: a Swiss Perspective

2009

504

0

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

Journal of proteomics

2009

609

0

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

Nucleic acids research

2009

660

134

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

Database

2009

673

335

The impact of 3D structures on a protein knowledgebase: from proteins to systems

Structural Proteomics and its Impact on the Life Sciences

2008

567

0

Calling on a million minds for community annotation in WikiProteins

GenomeBiology.com

2008

609

1,029

The 20 years of PROSITE

Nucleic acids research

2008

567

417

Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase

Human mutation

2008

658

107

UniProtKB/Swiss-Prot: new and future developments

Data Integration in the Life Sciences, Proceedings of the 5th International Workshop, DILS 2008

2008

568

0

New developments in the InterPro database

Nucleic acids research

2007

661

1,182

UniProtKB/Swiss-Prot

Methods in molecular biology

2007

681

0

Data integration in Proteomics

Proteome research: concepts, technology and applications

2007

544

0

Protein variations: resources and tools

Biomedical application of proteomics

2006

567

0

The Universal Protein Resource (UniProt): an expanding universe of protein information

Nucleic acids research

2006

666

770

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

Nucleic acids research

2006

819

391

Small can be beautiful, but it remains complex!

Complexus

2006

526

0

The PROSITE database

Nucleic acids research

2006

655

286

Functionally and structurally relevant residues in PROSITE motif descriptors

Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics

2005

481

1

Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase

Toxicon

2005

619

0

ProRule: a new database containing functional and structural information on PROSITE profiles

Bioinformatics

2005

687

197

Plant protein annotation in the UniProt Knowledgebase

Plant physiology

2005

516

178

InterPro, progress and status in 2005

Nucleic acids research

2005

672

22

Protein identification and analysis tools on the ExPASy server

The Proteomics Protocols Handbook

2005

1,450

0

The Universal Protein Resource (UniProt)

Nucleic acids research

2005

927

179

Protein variety and functional diversity: Swiss-Prot annotation in its biological context

Comptes rendus. Biologies

2005

606

0

The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants

Human mutation

2004

581

0

IntAct: an open source molecular interaction database

Nucleic acids research

2004

656

56

Annotation of post-translational modifications in the Swiss-Prot knowledge base

Proteomics

2004

584

0

Protein sequence databases

Current opinion in chemical biology

2004

440

0

The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools

Plant physiology and biochemistry

2004

601

0

Swiss-Prot: juggling between evolution and stability

Briefings in bioinformatics

2004

587

165

Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins

Proteomics

2004

596

0

Post-translational modifications: a challenge for proteomics and bioinformatics

Proteomics

2004

557

56

IntEnz, the integrated relational enzyme database

Nucleic acids research

2004

685

75

UniProt: the Universal Protein knowledgebase

Nucleic acids research

2004

1,281

159

Recent improvements to the PROSITE database

Nucleic acids research

2004

581

234

ExPASy: The proteomics server for in-depth protein knowledge and analysis

Nucleic acids research

2003

1,100

99

Protein databases

Nature Encyclopedia of the Human Genome

2003

503

0

PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse

Human genetics

2003

597

0

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

Nucleic acids research

2003

948

230

NEWT, a new taxonomy portal

Nucleic acids research

2003

581

43

The InterPro Database, 2003 brings increased coverage and new features

Nucleic acids research

2003

664

471

Automated annotation of microbial proteomes in SWISS-PROT

Computational biology and chemistry

2003

464

0

FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification

Proteomics

2002

656

0

The application of bioinformatics to mass spectrometry

Proteomics

2002

466

0

El nuevo servidor Latinoamericano de biologia molecular de la UCB: bo.expasy.org

Acta Nova

2002

269

164

The Sulfinator: predicting tyrosine sulfation sites in protein sequences

Bioinformatics

2002

624

217

High-quality protein knowledge resource: SWISS-PROT and TrEMBL

Briefings in bioinformatics

2002

619

508

The PROSITE database, its status in 2002

Nucleic acids research

2002

554

65

PROSITE: a documented database using patterns and profiles as motif descriptors

Briefings in bioinformatics

2002

628

268

ScanProsite: a reference implementation of a PROSITE scanning tool

Applied bioinformatics

2002

1,140

157

Annotation of glycoproteins in the SWISS-PROT database

Proteomics

2001

605

0

The human proteomics initiative (HPI)

Trends in biotechnology

2001

547

0

SWISS-PROT: connecting biomolecular knowledge via a protein database

Current issues in molecular biology

2001

803

128

Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al

Bioinformatics

2001

633

30

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

Nucleic acids research

2001

643

120

Quality control in databanks for molecular biology

BioEssays

2000

526

0

InterPro--an integrated documentation resource for protein families, domains and functional sites

Bioinformatics

2000

668

328

The ENZYME database in 2000

Nucleic acids research

2000

492

577

A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae

Yeast

2000

593

0

Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!

Bioinformatics

2000

603

560

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

Nucleic acids research

2000

642

701

The 1999 SWISS-2DPAGE database update

Nucleic acids research

2000

527

329

The PROSITE database, its status in 1999

Nucleic acids research

1999

544

157

Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping

Pharmacogenetics

1999

452

0

Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection

Electrophoresis

1999

570

0

Internet resources for protein identification and characterization

Microcharacterization of proteins

1999

362

0

The SWISS-2DPAGE database: what has changed during the last year

Nucleic acids research

1999

551

301

A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y

Human genetics

1999

597

0

High-throughput mass spectrometric discovery of protein post-translational modifications

Journal of Molecular Biology

1999

644

1,026

A molecular scanner to automate proteomic research and to display proteome images

Analytical chemistry

1999

584

596

The ENZYME data bank in 1999

Nucleic acids research

1999

475

531

Protein identification and analysis tools in the ExPASy server

Methods in Molecular Biology

1999

411

0

Representation of functional information in the SWISS-PROT data bank

Bioinformatics

1999

475

16

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

Nucleic acids research

1999

582

897

Low molecular weight proteins: a challenge for post-genomic research

Electrophoresis

1998

500

0

Multiple parameter cross-species protein identification using MultiIdent - a world-wide web accessible tool

Electrophoresis

1998

495

0

GPCRDB: an information system for G protein-coupled receptors

Nucleic acids research

1998

608

183

'98 Escherichia coli SWISS-2DPAGE database update

Electrophoresis

1998

628

2

Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number

Electrophoresis

1998

483

0

A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases

Protein science

1998

517

302

Construction of the gyrB Database for the Identification and Classification of Bacteria

Genomics & Informatics

1998

528

250

Protein annotation: detective work for function prediction

Trends in genetics

1998

483

0

Protein identification with N and C-terminal sequence tags in proteome projects

Journal of Molecular Biology

1998

498

0

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998

Nucleic acids research

1998

531

353

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling

Genome research

1998

434

36

Current status of the SWISS-2DPAGE database

Nucleic acids research

1998

500

35

Sequences and topology: Predicting evolution

Current opinion in structural biology

1997

470

0

Proteome Databases

Proteome research: new frontiers in functional genomics

1997

323

0

The PROSITE database, its status in 1997

Nucleic acids research

1997

512

16

The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence

Pharmacogenetics

1997

536

0

The SWISS-PROT protein sequence database: its relevance to human molecular medical research

Journal of molecular medicine

1997

497

0

Detailed peptide characterization using PEPTIDEMASS : a World-Wide-Web-accessible tool

Electrophoresis

1997

682

0

Arac/XylS family of transcriptional regulators

Microbiology and molecular biology reviews

1997

548

186

Molecular basis of symbiosis between Rhizobium and legumes

Nature

1997

914

0

Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL

Proceedings

1997

601

174

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

Nucleic acids research

1997

607

172

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995

Nucleic acids research

1996

644

60

The yeast SWISS-2DPAGE database

Electrophoresis

1996

585

0

The PROSITE database, its status in 1995

Nucleic acids research

1996

518

47

Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data

Electrophoresis

1996

539

0

Updating the sequence-based classification of glycosyl hydrolases

Biochemical journal

1996

646

91

The ENZYME data bank in 1995

Nucleic acids research

1996

540

82

Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database

Electrophoresis

1996

630

0

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Nucleic acids research

1996

579

20

Integrating two-dimensional gel databases using the Melanie II software

Trends in biochemical sciences

1996

710

0

The SWISS-PROT protein sequence data bank and its new supplement TREMBL

Nucleic acids research

1996

622

256

Go hunting in sequence databases but watch out for the traps

Trends in genetics

1996

579

0

Inside SWISS-2DPAGE database

Electrophoresis

1995

634

0

Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy

Methods of information in medicine

1995

535

0

The SWISS-PROT protein sequence data bank: current status

Nucleic acids research

1994

659

104

A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server

Trends in biochemical sciences

1994

580

0

Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes

Plant molecular biology reporter

1994

585

0

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Nucleic acids research

1994

576

14

The ENZYME data bank

Nucleic acids research

1994

615

73

PROSITE: recent developments

Nucleic acids research

1994

510

29

A novel zinc-binding motif found in two ubiquitous deaminase families

Protein science

1994

599

85

A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation

ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology

1994

551

208

The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis

Nucleic acids research

1994

598

133

The SWISS-PROT protein sequence data bank, recent developments

Nucleic acids research

1993

637

88

ExPASy: un système expert pour l'analyse de séquences protéiques

Technologie et Santé

1993

374

75

A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination

Research in microbiology

1993

533

0

Snake proteins and nucleic acids

Toxicon

1993

570

0

Human liver protein map: update 1993

Electrophoresis

1993

638

0

The PROSITE dictionary of sites and patterns in proteins, its current status

Nucleic acids research

1993

562

92

New families in the classification of glycosyl hydrolases based on amino acid sequence similarities

Biochemical journal

1993

917

57

SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images

Electrophoresis

1993

655

0

Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2

Nature

1993

620

0

A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators

Nucleic acids research

1993

603

50

The ENZYME data bank

Nucleic acids research

1993

569

144

Electrophorèse bidimensionnelle et informatique: un outil pour le diagnostic médical?

Labolife

1993

464

137

Plasma and red blood cell protein maps: update 1993

Electrophoresis

1993

593

0

The SWISS-PROT protein sequence data bank

Nucleic acids research

1992

651

56

PROSITE: a dictionary of sites and patterns in proteins

Nucleic acids research

1992

648

749

Human liver protein map: a reference database established by microsequencing and gel comparison

Electrophoresis

1992

622

0

cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily

European journal of biochemistry

1992

547

0

Proto-vav and gene expression

Nature

1992

596

0

Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component

The Journal of biological chemistry

1992

539

80

The SWISS-PROT protein sequence data bank

Nucleic acids research

1991

852

407

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

Journal of bacteriology

1991

572

587

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

Journal of bacteriology

1991

561

233

PROSITE: a dictionary of sites and patterns in proteins

Nucleic acids research

1991

659

408

SEQANALREF: a sequence analysis bibliographic reference databank

Computer applications in the biosciences

1991

623

223

EF-hand motifs in inositol phospholipid-specific phospholipase C

FEBS letters

1990

641

409

Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D

Biochemical journal

1990

612

507

A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank

Protein sequences & data analysis

1989

439

94

A unique signature identifies a family of zinc-dependent metallopeptidases

FEBS letters

1989

596

120

Sequence similarities in calcium-binding proteins

Nature

1988

564

0

Sequence patterns in protein kinases

Nature

1988

506

0

Using PC/GENE for protein and nucleic acid analysis

BioTechniques

1988

518

0

The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon

MGG. Molecular & general genetics

1987

572

0

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

MGG. Molecular & general genetics

1987

610

0

Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides

Journal of chromatography

1983

700

0

Suggestion to research groups working on protein and peptide sequence

Biochemical journal

1982

612

284

Evidence for the existence of a mutated enkephalin sequence in preproenkephalin

FEBS letters

1982

604

115

Affiliation entities

Research groups

Archive ouverte UNIGE

Bairoch, Amos Marc

account_balance Affiliation entities

Research groups

Affiliation entities