Bairoch, Amos Marc

Title	Published in	Year	Views	Downloads
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students	Database	2021	406	717
The ABCD database: a repository for chemically defined antibodies	Nucleic Acids Research	2020	642	486
A high-stringency blueprint of the human proteome	Nature Communications	2020	367	637
Brain metastasis cell lines panel: a public resource of organotropic cell lines	Cancer Research	2020	276	0
The neXtProt knowledgebase in 2020: data, tools and usability improvements	Nucleic Acids Research	2020	516	657
The feature-viewer: a visualization tool for positional annotations on a sequence	Bioinformatics	2020	306	0
CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authentication	International Journal of Cancer	2020	499	1,550
Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines	eLife	2019	412	159
Cell lines as biological models: practical steps for more reliable research	Chemical Research in Toxicology	2019	364	1
Exploring the Uncharacterized Human Proteome Using neXtProt	Journal of Proteome Research	2018	444	0
Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project	Journal of Proteome Research	2018	480	3
Kinases and Cancer	Cancers	2018	540	250
A new bioinformatics tool to help assess the significance of BRCA1 variants	Human Genomics	2018	538	243
The Cellosaurus, a Cell-Line Knowledge Resource	Journal of Biomolecular Techniques	2018	619	1,588
A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells	Stem Cell Reports	2018	584	361
The neXtProt knowledgebase on human proteins: 2017 update	Nucleic acids research	2017	553	417
Triage by ranking to support the curation of protein interactions	Database	2017	567	551
Annotation of functional impact of voltage-gated sodium channel mutations	Human mutation	2017	592	425
The missing protein landscape of human chromosomes 2 and 14: progress and current status	Journal of proteome research	2016	568	186
ICEPO: the ion channel electrophysiology ontology	Database	2016	596	278
Deep Question Answering for protein annotation	Database	2015	609	1,163
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat	Database	2015	552	327
N-terminome analysis of the human mitochondrial proteome	Proteomics	2015	604	0
The neXtProt knowledgebase on human proteins: current status	Nucleic acids research	2015	717	363
Converting neXtProt into Linked Data and nanopublications	Semantic web	2015	600	891
C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc₁ Complex Assembly and Supercomplex Stabilization	Molecular and cellular biology	2015	739	282
Key challenges for the creation and maintenance of specialist protein resources	Proteins	2015	549	122
Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins	Journal of proteome research	2014	755	988
Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression	Journal of web semantics	2014	633	0
Standards for Reporting Enzyme Data: The STRENDA Consortium: What it aims to do and why it should be helpful	Perspectives in science	2014	705	1,152
C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human	PloS one	2014	734	389
DERA is the human deoxyribose phosphate aldolase and is involved in stress response	Biochimica et biophysica acta. Molecular cell research	2014	741	338
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support	Nucleic acids research	2014	927	79
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17	Journal of proteome research	2013	683	0
A large-scale evaluation of computational protein function prediction	Nature methods	2013	741	1,301
neXtProt: organizing protein knowledge in the context of human proteome projects	Journal of proteome research	2013	738	0
Standard guidelines for the chromosome-centric human proteome project	Journal of proteome research	2012	662	0
The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome	Nature biotechnology	2012	652	0
UniPathway: a resource for the exploration and annotation of metabolic pathways	Nucleic acids research	2012	620	813
neXtProt: a knowledge platform for human proteins	Nucleic acids research	2012	721	483
Functional identification of APIP as human mtnB, a key enzyme in the methionine salvage pathway	PloS one	2012	629	452
Towards BioDBcore: a community-defined information specification for biological databases	Nucleic acids research	2011	556	375
ViralZone: a knowledge resource to understand virus diversity	Nucleic acids research	2011	820	904
A preliminary study on the prediction of human protein functions	Foundations on Natural and Artificial Computation: 4th International Work-conference on the Interplay Between Natural and Artificial Computation, IWINAC 2011	2011	506	0
The human proteome project: current state and future direction	Molecular & cellular proteomics	2011	726	770
PROSITE, a protein domain database for functional characterization and annotation	Nucleic acids research	2010	748	773
Animal Toxins: How is Complexity Represented in Databases?	Toxins	2010	555	500
Mass spectrometry in high-throughput proteomics: ready for the big time	Nature methods	2010	558	0
A large-scale protein-function database	Nature chemical biology	2010	630	301
OpenFluDB, a database for human and animal influenza virus	Database	2010	658	671
Infrastructure for the life sciences: design and implementation of the UniProt website	BMC bioinformatics	2009	1,041	2,673
Human aldehyde dehydrogenase genes: alternatively spliced transcriptional variants and their suggested nomenclature	Pharmacogenetics and genomics	2009	687	2
Managing the data explosion. A report on the HUPO-PSI Workshop. August 2008, Amsterdam, The Netherlands	Proteomics	2009	631	0
InterPro: the integrative protein signature database	Nucleic acids research	2009	664	174
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot	Nucleic acids research	2009	686	537
UniProtKB/Swiss-Prot manual and automated annotation of complete proteomes: the Dictyostelium discoideum case study	Bioinformatics: a Swiss Perspective	2009	541	0
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program	Journal of proteomics	2009	646	0
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens	Nucleic acids research	2009	728	246
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase	Database	2009	716	517
The impact of 3D structures on a protein knowledgebase: from proteins to systems	Structural Proteomics and its Impact on the Life Sciences	2008	600	0
Calling on a million minds for community annotation in WikiProteins	GenomeBiology.com	2008	646	1,045
The 20 years of PROSITE	Nucleic acids research	2008	608	495
Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase	Human mutation	2008	716	380
UniProtKB/Swiss-Prot: new and future developments	Data Integration in the Life Sciences, Proceedings of the 5th International Workshop, DILS 2008	2008	630	0
New developments in the InterPro database	Nucleic acids research	2007	723	1,315
UniProtKB/Swiss-Prot	Methods in molecular biology	2007	763	0
Data integration in Proteomics	Proteome research: concepts, technology and applications	2007	569	0
Protein variations: resources and tools	Biomedical application of proteomics	2006	618	0
The Universal Protein Resource (UniProt): an expanding universe of protein information	Nucleic acids research	2006	718	2,504
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins	Nucleic acids research	2006	937	719
Small can be beautiful, but it remains complex!	Complexus	2006	555	0
The PROSITE database	Nucleic acids research	2006	710	640
Functionally and structurally relevant residues in PROSITE motif descriptors	Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics	2005	514	1
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase	Toxicon	2005	695	0
ProRule: a new database containing functional and structural information on PROSITE profiles	Bioinformatics	2005	725	374
Plant protein annotation in the UniProt Knowledgebase	Plant physiology	2005	553	561
InterPro, progress and status in 2005	Nucleic acids research	2005	713	37
Protein identification and analysis tools on the ExPASy server	The Proteomics Protocols Handbook	2005	1,630	0
The Universal Protein Resource (UniProt)	Nucleic acids research	2005	1,013	1,449
Protein variety and functional diversity: Swiss-Prot annotation in its biological context	Comptes rendus. Biologies	2005	644	0
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants	Human mutation	2004	615	0
IntAct: an open source molecular interaction database	Nucleic acids research	2004	732	482
Annotation of post-translational modifications in the Swiss-Prot knowledge base	Proteomics	2004	618	0
Protein sequence databases	Current opinion in chemical biology	2004	478	0
The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools	Plant physiology and biochemistry	2004	630	0
Swiss-Prot: juggling between evolution and stability	Briefings in bioinformatics	2004	621	593
Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins	Proteomics	2004	637	0
Post-translational modifications: a challenge for proteomics and bioinformatics	Proteomics	2004	587	131
IntEnz, the integrated relational enzyme database	Nucleic acids research	2004	743	199
UniProt: the Universal Protein knowledgebase	Nucleic acids research	2004	1,351	682
Recent improvements to the PROSITE database	Nucleic acids research	2004	610	339
ExPASy: The proteomics server for in-depth protein knowledge and analysis	Nucleic acids research	2003	1,255	548
Protein databases	Nature Encyclopedia of the Human Genome	2003	576	0
PA26 is a candidate gene for heterotaxia in humans: identification of a novel PA26-related gene family in human and mouse	Human genetics	2003	640	0
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003	Nucleic acids research	2003	999	588
NEWT, a new taxonomy portal	Nucleic acids research	2003	622	117
The InterPro Database, 2003 brings increased coverage and new features	Nucleic acids research	2003	710	537
Automated annotation of microbial proteomes in SWISS-PROT	Computational biology and chemistry	2003	495	0
FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification	Proteomics	2002	691	0
The application of bioinformatics to mass spectrometry	Proteomics	2002	494	0
El nuevo servidor Latinoamericano de biologia molecular de la UCB: bo.expasy.org	Acta Nova	2002	308	330
The Sulfinator: predicting tyrosine sulfation sites in protein sequences	Bioinformatics	2002	731	379
High-quality protein knowledge resource: SWISS-PROT and TrEMBL	Briefings in bioinformatics	2002	666	1,702
The PROSITE database, its status in 2002	Nucleic acids research	2002	598	194
PROSITE: a documented database using patterns and profiles as motif descriptors	Briefings in bioinformatics	2002	675	1,030
ScanProsite: a reference implementation of a PROSITE scanning tool	Applied bioinformatics	2002	1,182	436
Annotation of glycoproteins in the SWISS-PROT database	Proteomics	2001	638	0
The human proteomics initiative (HPI)	Trends in biotechnology	2001	582	0
SWISS-PROT: connecting biomolecular knowledge via a protein database	Current issues in molecular biology	2001	849	323
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al	Bioinformatics	2001	667	95
The InterPro database, an integrated documentation resource for protein families, domains and functional sites	Nucleic acids research	2001	691	808
Quality control in databanks for molecular biology	BioEssays	2000	564	0
InterPro--an integrated documentation resource for protein families, domains and functional sites	Bioinformatics	2000	720	475
The ENZYME database in 2000	Nucleic acids research	2000	522	743
A comprehensive web resource on RNA helicases from the baker's yeast Saccharomyces cerevisiae	Yeast	2000	630	0
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times!	Bioinformatics	2000	649	2,261
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000	Nucleic acids research	2000	714	1,183
The 1999 SWISS-2DPAGE database update	Nucleic acids research	2000	588	439
The PROSITE database, its status in 1999	Nucleic acids research	1999	576	611
Eukaryotic aldehyde dehydrogenase (ALDH) genes: human polymorphisms, and recommended nomenclature based on divergent evolution and chromosomal mapping	Pharmacogenetics	1999	515	0
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection	Electrophoresis	1999	598	0
Internet resources for protein identification and characterization	Microcharacterization of proteins	1999	392	0
The SWISS-2DPAGE database: what has changed during the last year	Nucleic acids research	1999	591	432
A testis-specific gene, TPTE, encodes a putative transmembrane tyrosine phosphatase and maps to the pericentromeric region of human chromosomes 21 and 13, and to chromosomes 15, 22, and Y	Human genetics	1999	665	0
High-throughput mass spectrometric discovery of protein post-translational modifications	Journal of Molecular Biology	1999	698	1,428
A molecular scanner to automate proteomic research and to display proteome images	Analytical chemistry	1999	646	866
The ENZYME data bank in 1999	Nucleic acids research	1999	507	638
Protein identification and analysis tools in the ExPASy server	Methods in Molecular Biology	1999	445	0
Representation of functional information in the SWISS-PROT data bank	Bioinformatics	1999	502	63
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999	Nucleic acids research	1999	656	1,268
Low molecular weight proteins: a challenge for post-genomic research	Electrophoresis	1998	526	0
Multiple parameter cross-species protein identification using MultiIdent - a world-wide web accessible tool	Electrophoresis	1998	529	0
GPCRDB: an information system for G protein-coupled receptors	Nucleic acids research	1998	666	462
'98 Escherichia coli SWISS-2DPAGE database update	Electrophoresis	1998	680	2
Two-dimensional gel electrophoresis for proteome projects: the effects of protein hydrophobicity and copy number	Electrophoresis	1998	513	0
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases	Protein science	1998	553	342
Construction of the gyrB Database for the Identification and Classification of Bacteria	Genomics & Informatics	1998	588	610
Protein annotation: detective work for function prediction	Trends in genetics	1998	510	0
Protein identification with N and C-terminal sequence tags in proteome projects	Journal of Molecular Biology	1998	540	0
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998	Nucleic acids research	1998	573	518
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling	Genome research	1998	463	140
Current status of the SWISS-2DPAGE database	Nucleic acids research	1998	563	94
Sequences and topology: Predicting evolution	Current opinion in structural biology	1997	500	0
Proteome Databases	Proteome research: new frontiers in functional genomics	1997	380	0
The PROSITE database, its status in 1997	Nucleic acids research	1997	551	133
The UDP glycosyltransferase gene superfamily: recommended nomenclature update based on evolutionary divergence	Pharmacogenetics	1997	596	0
The SWISS-PROT protein sequence database: its relevance to human molecular medical research	Journal of molecular medicine	1997	539	0
Detailed peptide characterization using PEPTIDEMASS : a World-Wide-Web-accessible tool	Electrophoresis	1997	721	0
Arac/XylS family of transcriptional regulators	Microbiology and molecular biology reviews	1997	592	1,415
Molecular basis of symbiosis between Rhizobium and legumes	Nature	1997	993	0
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL	Proceedings	1997	658	1,541
The SWISS-PROT protein sequence data bank and its supplement TrEMBL	Nucleic acids research	1997	693	690
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995	Nucleic acids research	1996	692	165
The yeast SWISS-2DPAGE database	Electrophoresis	1996	637	0
The PROSITE database, its status in 1995	Nucleic acids research	1996	548	231
Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data	Electrophoresis	1996	577	0
Updating the sequence-based classification of glycosyl hydrolases	Biochemical journal	1996	679	297
The ENZYME data bank in 1995	Nucleic acids research	1996	573	221
Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database	Electrophoresis	1996	661	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1996	610	63
Integrating two-dimensional gel databases using the Melanie II software	Trends in biochemical sciences	1996	750	0
The SWISS-PROT protein sequence data bank and its new supplement TREMBL	Nucleic acids research	1996	697	874
Go hunting in sequence databases but watch out for the traps	Trends in genetics	1996	627	0
Inside SWISS-2DPAGE database	Electrophoresis	1995	683	0
Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy	Methods of information in medicine	1995	579	0
The SWISS-PROT protein sequence data bank: current status	Nucleic acids research	1994	710	314
A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server	Trends in biochemical sciences	1994	619	0
Proposals for the naming of chloroplast genes. III. Nomenclature for open reading frames encoded in chloroplast genomes	Plant molecular biology reporter	1994	613	0
LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces	Nucleic acids research	1994	606	38
The ENZYME data bank	Nucleic acids research	1994	653	131
PROSITE: recent developments	Nucleic acids research	1994	542	290
A novel zinc-binding motif found in two ubiquitous deaminase families	Protein science	1994	636	153
A generalized profile syntax for biomolecular sequence motifs and its function in automatic sequence interpretation	ISMB-94; Proceedings 2nd International Conference on Intelligent Systems for Molecular Biology	1994	585	501
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis	Nucleic acids research	1994	636	238
The SWISS-PROT protein sequence data bank, recent developments	Nucleic acids research	1993	674	306
ExPASy: un système expert pour l'analyse de séquences protéiques	Technologie et Santé	1993	410	93
A diverse transketolase family that includes the RecP protein of Streptococcus pneumoniae, a protein implicated in genetic recombination	Research in microbiology	1993	578	0
Snake proteins and nucleic acids	Toxicon	1993	615	0
Human liver protein map: update 1993	Electrophoresis	1993	710	0
The PROSITE dictionary of sites and patterns in proteins, its current status	Nucleic acids research	1993	593	913
New families in the classification of glycosyl hydrolases based on amino acid sequence similarities	Biochemical journal	1993	947	253
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images	Electrophoresis	1993	736	0
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2	Nature	1993	671	0
A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators	Nucleic acids research	1993	637	104
The ENZYME data bank	Nucleic acids research	1993	606	347
Electrophorèse bidimensionnelle et informatique: un outil pour le diagnostic médical?	Labolife	1993	518	196
Plasma and red blood cell protein maps: update 1993	Electrophoresis	1993	630	0
The SWISS-PROT protein sequence data bank	Nucleic acids research	1992	696	253
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1992	751	2,023
Human liver protein map: a reference database established by microsequencing and gel comparison	Electrophoresis	1992	661	0
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily	European journal of biochemistry	1992	573	0
Proto-vav and gene expression	Nature	1992	623	0
Interleukin-1-inducible genes in endothelial cells. Cloning of a new gene related to C-reactive protein and serum amyloid P component	The Journal of biological chemistry	1992	587	158
The SWISS-PROT protein sequence data bank	Nucleic acids research	1991	947	632
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases	Journal of bacteriology	1991	613	625
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases	Journal of bacteriology	1991	600	280
PROSITE: a dictionary of sites and patterns in proteins	Nucleic acids research	1991	782	740
SEQANALREF: a sequence analysis bibliographic reference databank	Computer applications in the biosciences	1991	648	302
EF-hand motifs in inositol phospholipid-specific phospholipase C	FEBS letters	1990	690	478
Calcium-binding affinity and calcium-enhanced activity of Clostridium thermocellum endoglucanase D	Biochemical journal	1990	655	596
A cross-reference table between the Protein Data Bank of macromolecular structures and the National Biomedical Research Foundation-Protein Identification Resource amino acid sequence data bank	Protein sequences & data analysis	1989	466	152
A unique signature identifies a family of zinc-dependent metallopeptidases	FEBS letters	1989	636	257
Sequence similarities in calcium-binding proteins	Nature	1988	592	0
Sequence patterns in protein kinases	Nature	1988	552	0
Using PC/GENE for protein and nucleic acid analysis	BioTechniques	1988	549	0
The xylS gene positive regulator of TOL plasmid pWWO: identification, sequence analysis and overproduction leading to constitutive expression of meta cleavage operon	MGG. Molecular & general genetics	1987	679	0
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids	MGG. Molecular & general genetics	1987	644	0
Amino acid sequence determination by gas chromatography—mass spectrometry of permethylated peptides	Journal of chromatography	1983	724	0
Suggestion to research groups working on protein and peptide sequence	Biochemical journal	1982	640	327
Evidence for the existence of a mutated enkephalin sequence in preproenkephalin	FEBS letters	1982	634	208