Scientific article
OA Policy
English

Plant protein annotation in the UniProt Knowledgebase

Published inPlant physiology, vol. 138, no. 1, p. 59-66
Publication date2005
Abstract

The Swiss-Prot, TrEMBL, Protein Information Resource (PIR), and DNA Data Bank of Japan (DDBJ) protein database activities have united to form the Universal Protein Resource (UniProt) Consortium. UniProt presents three database layers: the UniProt Archive, the UniProt Knowledgebase (UniProtKB), and the UniProt Reference Clusters. The UniProtKB consists of two sections: UniProtKB/Swiss-Prot (fully manually curated entries) and UniProtKB/TrEMBL (automated annotation, classification and extensive cross-references). New releases are published fortnightly. A specific Plant Proteome Annotation Program (http://www.expasy.org/sprot/ppap/) was initiated to cope with the increasing amount of data produced by the complete sequencing of plant genomes. Through UniProt, our aim is to provide the scientific community with a single, centralized, authoritative resource for protein sequences and functional information that will allow the plant community to fully explore and utilize the wealth of information available for both plant and non-plant model organisms.

Keywords
  • Amino Acid Sequence
  • Computational Biology
  • Databases, Protein
  • Information Systems
  • Internet
  • Plant Proteins/chemistry/genetics
  • Proteomics
  • Systems Integration
  • User-Computer Interface
Citation (ISO format)
SCHNEIDER, Michel et al. Plant protein annotation in the UniProt Knowledgebase. In: Plant physiology, 2005, vol. 138, n° 1, p. 59–66. doi: 10.1104/pp.104.058933
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accessLevelPublic
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Additional URL for this publicationhttp://www.plantphysiol.org/content/138/1/59.long
Journal ISSN0032-0889
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