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Title

LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces

Authors
Dölz, Reinhard
Mossé, Marie-Odile
Slonimski, Piotr P
Published in Nucleic Acids Research. 1996, vol. 24, no. 1, p. 50-2
Abstract We continued our effort to make a comprehensive database (LISTA) for the yeast Saccharomyces cerevisiae. As in previous editions the genetic names are consistently associated to each sequence with a known and confirmed ORF. If necessary, synonyms are given in the case of allelic duplicated sequences. Although the first publication of a sequence gives-according to our rules-the genetic name of a gene, in some instances more commonly used names are given to avoid nomenclature problems and the use of ancient designations which are no longer used. In these cases the old designation is given as synonym. Thus sequences can be found either by the name or by synonyms given in LISTA. Each entry contains the genetic name, the mnemonic from the EMBL data bank, the codon bias, reference of the publication of the sequence, Chromosomal location as far as known, SWISSPROT and EMBL accession numbers. New entries will also contain the name from the systematic sequencing efforts. Since the release of LISTA4.1 we update the database continuously. To obtain more information on the included sequences, each entry has been screened against non-redundant nucleotide and protein data bank collections resulting in LISTA-HON and LISTA-HOP. This release includes reports from full Smith and Watermann peptide-level searches against a non-redundant protein sequence database. The LISTA data base can be linked to the associated data sets or to nucleotide and protein banks by the Sequence Retrieval System (SRS). The database is available by FTP and on World Wide Web.
Keywords Amino Acid SequenceChromosome MappingComputer Communication NetworksDatabases, FactualFungal Proteins/chemistry/geneticsSaccharomyces cerevisiae/geneticsSequence Homology, Amino Acid
Identifiers
PMID: 8594599
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Structures
Research groups Calipho (80)
Swiss-Prot Research Group
Acquisition et expression de facteurs de virulence chez Staphylococcus aureus (86)
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DÖLZ, Reinhard et al. LISTA, LISTA-HOP and LISTA-HON: a comprehensive compilation of protein encoding sequences and its associated homology databases from the yeast Saccharomyces. In: Nucleic Acids Research, 1996, vol. 24, n° 1, p. 50-2. https://archive-ouverte.unige.ch/unige:36906

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