UNIGE document Scientific Article
previous document  unige:30568  next document
add to browser collection
Title

The InterPro Database, 2003 brings increased coverage and new features

Authors
Mulder, Nicola J
Apweiler, Rolf
Attwood, Teresa K
Barrell, Daniel
Bateman, Alex
Binns, David
Biswas, Margaret
show hidden authors show all authors [1 - 37]
Published in Nucleic Acids Research. 2003, vol. 31, no. 1, p. 315-8
Abstract InterPro, an integrated documentation resource of protein families, domains and functional sites, was created in 1999 as a means of amalgamating the major protein signature databases into one comprehensive resource. PROSITE, Pfam, PRINTS, ProDom, SMART and TIGRFAMs have been manually integrated and curated and are available in InterPro for text- and sequence-based searching. The results are provided in a single format that rationalises the results that would be obtained by searching the member databases individually. The latest release of InterPro contains 5629 entries describing 4280 families, 1239 domains, 95 repeats and 15 post-translational modifications. Currently, the combined signatures in InterPro cover more than 74% of all proteins in SWISS-PROT and TrEMBL, an increase of nearly 15% since the inception of InterPro. New features of the database include improved searching capabilities and enhanced graphical user interfaces for visualisation of the data. The database is available via a webserver (http://www.ebi.ac.uk/interpro) and anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro).
Keywords AnimalsComputer GraphicsDatabases, ProteinProtein Processing, Post-TranslationalProtein Structure, TertiaryProteins/chemistry/genetics/metabolismRepetitive Sequences, Amino AcidUser-Computer Interface
Identifiers
PMID: 12520011
Full text
Article (Published version) (444 Kb) - public document Free access
Structures
Research group Calipho (80)
Citation
(ISO format)
MULDER, Nicola J et al. The InterPro Database, 2003 brings increased coverage and new features. In: Nucleic Acids Research, 2003, vol. 31, n° 1, p. 315-8. https://archive-ouverte.unige.ch/unige:30568

190 hits

217 downloads

Update

Deposited on : 2013-10-22

Export document
Format :
Citation style :