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Title

Citesdb: An R package to support analysis of CITES Trade Database shipment-level data

Authors
Ross, Noam
Eskew, Evan
Published in Journal of Open Source Software. 2019, vol. 4, no. 37, p. 1483
Abstract International trade is a significant threat to wildlife globally (Bennett et al., 2002; Bush, Baker, & Macdonald, 2014; Lenzen et al., 2012; Tingley, Harris, Hua, Wilcove, & Yong, 2017). Consequently, high-quality, widely accessible data on the wildlife trade are ur- gently needed to generate effective conservation strategies and action (Joppa et al., 2016). The Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) provides a key wildlife trade dataset for conservationists, the CITES Trade Database, which is maintained by the UN Environment World Conservation Monitoring Centre. Broadly, CITES is a trade oversight mechanism which aims to limit the negative effects of overharvesting, and the CITES Trade Database represents compiled data from CITES Parties regarding the trade of wildlife or wildlife products listed under the CITES Appendices. Despite data complexities that can complicate interpretation (Berec, Vršecká, & Šetlíková, 2018; Eskew, Ross, Zambrana-Torrelio, & Karesh, 2019; Harrington, 2015; Lopes, Ferreira, & Moraes-Barros, 2017; Robinson & Sinovas, 2018), the CITES Trade Database remains a critically important resource for evaluating the extent and impact of the legal, international wildlife trade (Harfoot et al., 2018). citesdb is an R package designed to support analysis of the recently released shipment- level CITES Trade Database (UNEP-WCMC, 2019). Currently, the database contains over 40 years and 20 million records of shipments of wildlife and wildlife products subject to reporting under CITES, including individual shipment permit IDs that have been anonymized by hashing, and accompanying metadata. Harfoot et al. (2018) provide a recent overview of broad temporal and spatial trends in this data. To facilitate further analysis of this large dataset, the citesdb package imports the CITES Trade Database into a local, on-disk embedded database (Raasveldt & Mühleisen, 2018). This avoids the need for users to pre-process the data or load the multi-gigabyte dataset into memory. The MonetDB back-end allows high-performance querying and is accessible via a DBI- and dp lyr-compatible interface familiar to most R users (R Special Interest Group on Databases (R-SIG-DB), Wickham, & Müller, 2018; Wickham, François, Henry, & Müller, 2019). For users of the RStudio integrated development environment (RStudio Team, 2015), the package also provides an interactive pane for exploring the database and previewing data. citesdb has undergone code review at rOpenSci.
Keywords CITESOpen sourceEndangered speciesConservation
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Article (Published version) (133 Kb) - public document Free access
Structures
Research groups GeoHealth: approches géospatiales et environnementales en santé globale (1000)
TIGERS
ISE Pôle Informatique environnementale
ISE Biodiversité
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(ISO format)
ROSS, Noam, ESKEW, Evan, RAY, Nicolas. Citesdb: An R package to support analysis of CITES Trade Database shipment-level data. In: Journal of Open Source Software, 2019, vol. 4, n° 37, p. 1483. https://archive-ouverte.unige.ch/unige:118703

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Deposited on : 2019-06-04

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