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Title

SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

Authors
Arenas, Miguel
Excoffier, Laurent
Published in Bioinformatics. 2019, vol. 35, no. 21, p. 4480–4483
Abstract SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include long-distance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and Implementation: SPLATCHE3 is written in C++ and is freely available for non- commercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples.
Keywords Population geneticsSoftwareDispersalDNA
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Structures
Research groups GeoHealth: approches géospatiales et environnementales en santé globale (1000)
TIGERS
ISE Pôle Informatique environnementale
ISE Biodiversité
Groupe Currat
Laboratory of Anthropology, Genetics and Peopling history (AGP)
Unité d'anthropologie
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CURRAT, Mathias et al. SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. In: Bioinformatics, 2019, vol. 35, n° 21, p. 4480–4483. doi: 10.1093/bioinformatics/btz311 https://archive-ouverte.unige.ch/unige:117770

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Deposited on : 2019-05-20

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