Scientific article
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English

SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal

Published inBioinformatics, vol. 35, no. 21, p. 4480-4483
Publication date2019
Abstract

SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include long-distance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and Implementation: SPLATCHE3 is written in C++ and is freely available for non- commercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples.

Keywords
  • Population genetics
  • Software
  • Dispersal
  • DNA
Citation (ISO format)
CURRAT, Mathias et al. SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal. In: Bioinformatics, 2019, vol. 35, n° 21, p. 4480–4483. doi: 10.1093/bioinformatics/btz311
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Article (Published version)
Identifiers
Journal ISSN1367-4803
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Technical informations

Creation15/05/2019 14:22:00
First validation15/05/2019 14:22:00
Update time15/03/2023 17:31:37
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