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Scientific article
English

The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server

Published inJournal of proteomics, vol. 71, no. 2, p. 245-248
Publication date2008
Abstract

Since it was launched in 1993, the ExPASy server has been and is still a reference in the proteomics world. ExPASy users access various databases, many dedicated tools, and lists of resources, among other services. A significant part of resources available is devoted to two-dimensional electrophoresis data. Our latest contribution to the expansion of the pool of on-line proteomics data is the World-2DPAGE Constellation, accessible at http://world-2dpage.expasy.org/. It is composed of the established WORLD-2DPAGE List of 2-D PAGE database servers, the World-2DPAGE Portal that queries simultaneously world-wide proteomics databases, and the recently created World-2DPAGE Repository. The latter component is a public standards-compliant repository for gel-based proteomics data linked to protein identifications published in the literature. It has been set up using the Make2D-DB package, a software tool that helps building SWISS-2DPAGE-like databases on one's own Web site. The lack of necessary informatics infrastructure to build and run a dedicated website is no longer an obstacle to make proteomics data publicly accessible on the Internet.

Keywords
  • Animals
  • Databases, Protein
  • Electrophoresis, Gel, Two-Dimensional
  • Humans
  • Internet
  • Peptide Mapping
  • Proteomics
Citation (ISO format)
HOOGLAND, Christine et al. The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server. In: Journal of proteomics, 2008, vol. 71, n° 2, p. 245–248. doi: 10.1016/j.jprot.2008.02.005
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ISSN of the journal1874-3919
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