Scientific article
English

Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray

Published inJournal of clinical microbiology, vol. 45, no. 3, p. 1049-1052
Publication date2007
Abstract

A nonfluorescent low-cost, low-density oligonucleotide array was designed for detecting the whole coronavirus genus after reverse transcription (RT)-PCR. The limit of detection was 15.7 copies/reaction. The clinical detection limit in patients with severe acute respiratory syndrome was 100 copies/sample. In 39 children suffering from coronavirus 229E, NL63, OC43, or HKU1, the sensitivity was equal to that of individual real-time RT-PCRs.

Keywords
  • Bacterial Typing Techniques
  • Coronavirus/ classification/genetics/isolation & purification
  • Coronavirus 229E, Human/classification/genetics/isolation & purification
  • Coronavirus OC43, Human/classification/genetics/isolation & purification
  • Humans
  • Oligonucleotide Array Sequence Analysis/ methods
  • RNA, Viral/analysis/genetics
  • Reverse Transcriptase Polymerase Chain Reaction/ methods
  • SARS Virus/classification/genetics/isolation & purification
  • Species Specificity
Citation (ISO format)
DE SOUZA LUNA, L. K. et al. Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray. In: Journal of clinical microbiology, 2007, vol. 45, n° 3, p. 1049–1052. doi: 10.1128/JCM.02426-06
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Journal ISSN0095-1137
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