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Managing and publishing proteomics data : the Make2D-DB II tool, an integrative environment applied to 2-DE datasets

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Defense Thèse de doctorat : Univ. Genève, 2008 - Sc. 4001 - 2008/05/27
Abstract We have developed Make2D-DB II, a distributed environment that converts, processes, publishes, maintains, and interonnects Two-Dimensional Polyacrylamide Gel Electrophoresis (2-DPAGE) databases. The tool is based on top of an extended, realistic, and highly consistent data model that efficiently captures all aspects of 2D-PAGE analyses and related data. The environment ensures strong data reliability, automatic integration of external data, and interoperability between remote databases. In addition, the tool is provided with an intuitive query interface that can access simultaneously any number of remote 2D-PAGE databases. Dynamic synchronisation between remote databases ensures that distant databases are up-to-date with regard to each other. Make2D-DB II is a fully functional environment that can be used to build single databases, dynamic portals, and public repositories. Many world-famous institutions are currently managing and publishing their proteomics data using our tool.
Keywords BioinformaticsProteomics2D-PAGEDatabaseManagement
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URN: urn:nbn:ch:unige-6124
Note Texte en anglais avec résumé en français
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Research group Swiss Institute of Bioinformatics
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MOSTAGUIR, Khaled. Managing and publishing proteomics data : the Make2D-DB II tool, an integrative environment applied to 2-DE datasets. Université de Genève. Thèse, 2008. https://archive-ouverte.unige.ch/unige:612

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Deposited on : 2008-12-03

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