Age-related proteome analysis of the mouse brain: a 2-DE study

Carrette, Odile; Burkhard, Pierre; Hochstrasser, Denis; Sanchez, Jean-Charles

doi:10.1002/pmic.200600084

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Title		Age-related proteome analysis of the mouse brain: a 2-DE study
Authors		Carrette, Odile Burkhard, Pierre Hochstrasser, Denis Sanchez, Jean-Charles
Published in		Proteomics. 2006, vol. 6, no. 18, p. 4940-9
Abstract		2-DE remains the most popular and versatile protein separation method among a rapidly growing array of various proteomics technologies. However, variability in sample processing, experimental design and data analyses results in a limited cross-validation between studies performed in different laboratories. One of the goals of the Human Proteome Organization (HUPO) is to establish standards and guidelines for proteomics studies. We contributed to the HUPO Brain Proteome Project by analyzing brains from neonatal and adult mice using 2-DE. Here we propose a standard workflow to analyze 2-DE images and extract statistically significant differences. After differential analysis and identification by MALDI-TOF/TOF, dihydropyrimidinase-related proteins, brain FABP, stathmin, isocitrate dehydrogenase, gamma enolase, annexin V, glutamine synthetase, creatine kinase B chain, triosephosphate dehydrogenase, and malate dehydrogenase were found differentially expressed between the two groups. The functions and potential mechanisms underlying the variation observed for these proteins are discussed.
Keywords		Aging/metabolism — Amino Acid Sequence — Animals — Animals, Newborn — Brain/growth & development/metabolism — Data Interpretation, Statistical — Electrophoresis, Gel, Two-Dimensional — Fluorescent Dyes — Humans — Image Processing, Computer-Assisted — Mice — Mice, Inbred C57BL — Molecular Sequence Data — Proteome/metabolism — Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Identifiers		DOI: 10.1002/pmic.200600084 PMID: 16912971
Full text		Article (Published version) (337 Kb) - Limited access to UNIGE
Structures		Faculté des sciences / Section des sciences pharmaceutiques Faculté de médecine / Section de médecine fondamentale / Département de biologie structurale et bioinformatique
Research groups		Groupe de Protéomique biomédicale (635) Groupe Pierre Burkhard (neurologie) (154)
Citation (ISO format)		CARRETTE, Odile et al. Age-related proteome analysis of the mouse brain: a 2-DE study. In: Proteomics, 2006, vol. 6, n° 18, p. 4940-9. doi: 10.1002/pmic.200600084 https://archive-ouverte.unige.ch/unige:33534