UNIGE document Scientific Article
previous document  unige:31577  next document
add to browser collection
Title

A novel regulatory element between the human FGA and FGG genes

Authors
Published in Thrombosis and Haemostasis. 2012, vol. 108, no. 3, p. 427-34
Abstract High circulating fibrinogen levels correlate with cardiovascular disease (CVD) risk. Fibrinogen levels vary between people and also change in response to physiological and environmental stimuli. A modest proportion of the variation in fibrinogen levels can be explained by genotype, inferring that variation in genomic sequences that regulate the fibrinogen genes ( FGA , FGB and FGG ) may affect hepatic fibrinogen production and perhaps CVD risk. We previously identified a conserved liver enhancer in the fibrinogen gene cluster (CNC12), between FGB and FGA . Genome-wide Chromatin immunoprecipitation-sequencing (ChIP-seq) demonstrated that transcription factors which bind fibrinogen gene promoters also interact with CNC12, as well as two potential fibrinogen enhancers (PFE), between FGA and FGG . Here we show that one of the PFE sequences has potent hepatocyte enhancer activity. Using a luciferase reporter gene system, we found that PFE2 enhances minimal promoter- and FGA promoter-driven gene expression in hepatoma cells, regardless of its orientation with respect to the promoters. A region within PFE2 bears a short series of conserved nucleotides which maintain enhancer activity without flanking sequence. We also demonstrate that PFE2 is a liver enhancer in vivo, driving enhanced green fluorescent protein expression in transgenic zebrafish larval livers. Our study shows that combining public domain ChIP-seq data with in vitro and in vivo functional tests can identify novel fibrinogen gene cluster regulatory sequences. Variation in such elements could affect fibrinogen production and influence CVD risk.
Keywords AnimalsAnimals, Genetically ModifiedCarcinoma, Hepatocellular/pathologyCell Line, Tumor/metabolismChromatin ImmunoprecipitationChromosome MappingConserved SequenceEnhancer Elements, Genetic/geneticsFibrinogen/geneticsGene Expression RegulationGenes, ReporterGenes, SyntheticGreen Fluorescent Proteins/biosynthesis/geneticsHEK293 Cells/metabolismHep G2 Cells/metabolismHepatocytes/metabolismHumansLarvaLiver Neoplasms/pathologyLuciferases/biosynthesis/geneticsMiceRecombinant Fusion Proteins/biosynthesis/geneticsTransgenesZebrafish/growth & development
Identifiers
PMID: 22836734
Note special issue
Full text
Article (Author postprint) (394 Kb) - document accessible for UNIGE members only Limited access to UNIGE
Structures
Project FNS: 31003A-134967
Citation
(ISO format)
FISH, Richard, NEERMAN ARBEZ, Marguerite. A novel regulatory element between the human FGA and FGG genes. In: Thrombosis and Haemostasis, 2012, vol. 108, n° 3, p. 427-34. https://archive-ouverte.unige.ch/unige:31577

254 hits

0 download

Update

Deposited on : 2013-12-03

Export document
Format :
Citation style :