We present a high-pressure single-crystal X-ray diffraction study of the atomically precise Au25(PET)18q cluster (q = −1, 0) up to 10 GPa under strictly hydrostatic conditions. Our crystallographic analysis provides direct evidence of the pressure-induced phase transitions previously suggested by spectroscopic studies. Structural refinements reveal that the cluster accommodates compression through the reorganization of the flexible ligand shell and secondary distortions of the staple motifs, while the Au13 icosahedral core remains intact. Notably, the internal Au–Au distances exhibit a monotonic contraction that quantitatively mirrors the compressibility of bulk gold. This invariant rigidity at the sub-nanometer scale demonstrates that the fundamental stiffness of the metallic bond is preserved regardless of size. Our findings reconcile previous contradictions in the elasticity of metal nanostructures by isolating the intrinsic mechanical response of the Au kernel from extrinsic structural and experimental artifacts.