We study the propagation of extremely short electromagnetic three-dimensional bipolar pulses in an array of semiconductor carbon nanotubes. The heterogeneity of the pulse field along the axis of the nanotubes is accounted for the first time. The evolution of the electromagnetic field and the charge density of the sample are described by Maxwell's equations supplemented by the continuity equation. Our analysis reveals for the first time the possibility of propagation of three-dimensional electromagnetic breathers in CNTs arrays. Specifically, we found that the propagation of short electromagnetic pulse induces a redistribution of the electron density in the sample.