Scientific article
OA Policy
English

Multi-institutional PET/CT image segmentation using federated deep transformer learning

Published inComputer methods and programs in biomedicine, vol. 240, 107706
Publication date2023-10
Abstract

Background and objective: Generalizable and trustworthy deep learning models for PET/CT image segmentation necessitates large diverse multi-institutional datasets. However, legal, ethical, and patient privacy issues challenge sharing of datasets between different centers. To overcome these challenges, we developed a federated learning (FL) framework for multi-institutional PET/CT image segmentation.

Methods: A dataset consisting of 328 FL (HN) cancer patients who underwent clinical PET/CT examinations gathered from six different centers was enrolled. A pure transformer network was implemented as fully core segmentation algorithms using dual channel PET/CT images. We evaluated different frameworks (single center-based, centralized baseline, as well as seven different FL algorithms) using 68 PET/CT images (20% of each center data). In particular, the implemented FL algorithms include clipping with the quantile estimator (ClQu), zeroing with the quantile estimator (ZeQu), federated averaging (FedAvg), lossy compression (LoCo), robust aggregation (RoAg), secure aggregation (SeAg), and Gaussian differentially private FedAvg with adaptive quantile clipping (GDP-AQuCl).

Results: The Dice coefficient was 0.80±0.11 for both centralized and SeAg FL algorithms. All FL approaches achieved centralized learning model performance with no statistically significant differences. Among the FL algorithms, SeAg and GDP-AQuCl performed better than the other techniques. However, there was no statistically significant difference. All algorithms, except the center-based approach, resulted in relative errors less than 5% for SUVmax and SUVmean for all FL and centralized methods. Centralized and FL algorithms significantly outperformed the single center-based baseline.

Conclusions: The developed FL-based (with centralized method performance) algorithms exhibited promising performance for HN tumor segmentation from PET/CT images.

Keywords
  • Deep transformers
  • Federated learning
  • PET/CT
  • Privacy
  • Segmentation
  • Algorithms
  • Deep Learning
  • Humans
  • Image Processing, Computer-Assisted / methods
  • Neoplasms / diagnostic imaging
  • Positron Emission Tomography Computed Tomography / methods
Funding
Citation (ISO format)
SHIRI LORD, Isaac et al. Multi-institutional PET/CT image segmentation using federated deep transformer learning. In: Computer methods and programs in biomedicine, 2023, vol. 240, p. 107706. doi: 10.1016/j.cmpb.2023.107706
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Article (Published version)
Identifiers
Journal ISSN0169-2607
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Technical informations

Creation26/07/2023 09:26:42
First validation15/11/2023 13:40:33
Update time13/10/2025 14:13:20
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