Allogromiid foraminifera and gromiids constitute an important but poorly known component of the meiobenthos in high-latitude marine settings. Here, we present a first report on the diversity of these protists, together with an account of co-occurring invertebrate taxa, in a sample of sea floor sediment from a water depth of 923 m under the Ross Ice Shelf. Light microscopy of sieved sediment yielded 14 allogromiid foraminifera and three Gromia spp. morphotypes. We also obtained 36 partial small subunit rDNA sequences of allogromiids, including 19 sequences of individual isolates and 17 sequences from environmental DNA samples. Phylogenetic analyses of the obtained sequences identified 18 phylotypes, of which seven were closely related to previously sequenced allogromiids, while 11 represented new lineages. Our results demonstrate that a rich meiofaunal assemblage is present under the Ross Ice Shelf, 12 km from the open ocean. Molecular phylogenetic analyses of these allogromiid foraminifera point to the endemic character of the Ross Ice Shelf assemblage; however, more extensive sampling of the molecular diversity of this group of foraminifera in the Antarctic deep sea is necessary to confirm this conclusion.