A summary of the state of the art in the development of two submersible voltammetric probes performed by us to allow continuous, real-time monitoring of trace elements (Cu(II), Pb(II), Cd(II), Zn(II) and Mn(II), Fe(II)) in natural aquatic ecosystems is given. The first one, called the voltammetric in situ (VIP) profiling system, allowed in situ measurements in surface water and groundwater down to 500 m. Its construction required the development of: (i) a gel-integrated, either single or interconnected, array microsensor, (ii) a submersible probe and (iii) hardware, firmware and software for control of the whole system: i.e. data transmission and acquisition, data processing and maintenance operations. The second system, called the sediment-water interface voltammetric in situ profiling (SIVIP) system, has been developed to allow real-time, high spatial resolution trace elements concentration profile measurements at the sediment-water interface. Its construction required the development of: (i) a gel-integrated microsensor array with 64 individually addressable lines, (ii) a voltammetric probe based on powerful double multiplexing system and single potentiostat allowing simultaneous measurements over the 64 sensor lines, and (iii) hardware, firmware and software for control of the whole system. A general description of both systems as well as examples of laboratory characterization and/or field applications are reported.