Scientific article
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COVID-19 prognostic modeling using CT radiomic features and machine learning algorithms: Analysis of a multi-institutional dataset of 14,339 patients

Published inComputers in biology and medicine, vol. 145, 105467
Publication date2022-06
Abstract

Background: We aimed to analyze the prognostic power of CT-based radiomics models using data of 14,339 COVID-19 patients.

Methods: Whole lung segmentations were performed automatically using a deep learning-based model to extract 107 intensity and texture radiomics features. We used four feature selection algorithms and seven classifiers. We evaluated the models using ten different splitting and cross-validation strategies, including non-harmonized and ComBat-harmonized datasets. The sensitivity, specificity, and area under the receiver operating characteristic curve (AUC) were reported.

Results: In the test dataset (4,301) consisting of CT and/or RT-PCR positive cases, AUC, sensitivity, and specificity of 0.83 ± 0.01 (CI95%: 0.81-0.85), 0.81, and 0.72, respectively, were obtained by ANOVA feature selector + Random Forest (RF) classifier. Similar results were achieved in RT-PCR-only positive test sets (3,644). In ComBat harmonized dataset, Relief feature selector + RF classifier resulted in the highest performance of AUC, reaching 0.83 ± 0.01 (CI95%: 0.81-0.85), with a sensitivity and specificity of 0.77 and 0.74, respectively. ComBat harmonization did not depict statistically significant improvement compared to a non-harmonized dataset. In leave-one-center-out, the combination of ANOVA feature selector and RF classifier resulted in the highest performance.

Conclusion: Lung CT radiomics features can be used for robust prognostic modeling of COVID-19. The predictive power of the proposed CT radiomics model is more reliable when using a large multicentric heterogeneous dataset, and may be used prospectively in clinical setting to manage COVID-19 patients.

Keywords
  • COVID-19
  • Machine learning
  • Prognosis
  • Radiomics
  • X-ray CT
  • Algorithms
  • COVID-19 / diagnostic imaging
  • Humans
  • Lung Neoplasms
  • Machine Learning
  • Prognosis
  • Retrospective Studies
  • Tomography, X-Ray Computed / methods
Citation (ISO format)
SHIRI LORD, Isaac et al. COVID-19 prognostic modeling using CT radiomic features and machine learning algorithms: Analysis of a multi-institutional dataset of 14,339 patients. In: Computers in biology and medicine, 2022, vol. 145, p. 105467. doi: 10.1016/j.compbiomed.2022.105467
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accessLevelPublic
Identifiers
Journal ISSN0010-4825
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Technical informations

Creation02/04/2022 20:25:00
First validation02/04/2022 20:25:00
Update16/03/2023 06:46:46
Status update16/03/2023 06:46:42
Last indexation15/04/2025 15:40:28
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