Scientific article

English

Phigaro: high-throughput prophage sequence annotation

ContributorsStarikova, Elizaveta V; Tikhonova, Polina O; Prianichnikov, Nikita A; Rands, Christopher; Zdobnov, Evgeny; Ilina, Elena N; Govorun, Vadim M

Published inBioinformatics, vol. 36, no. 12, p. 3882-3884

Publication date2020

Abstract

Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated 'prophage genome maps' and marks possible transposon insertion spots inside prophages. It is applicable for mining prophage regions from large metagenomic datasets.

Affiliation entities

Faculté de médecine / Section de médecine fondamentale / Département de médecine génétique et développement

Research groups

Génomique Evolutionnaire Computationnelle (830)

Funding

Swiss National Science Foundation - Understanding the virome's role in the spread of antibiotic resistance through meta-analysis of human microbiomes [163863]

Citation (ISO format)

STARIKOVA, Elizaveta V et al. Phigaro: high-throughput prophage sequence annotation. In: Bioinformatics, 2020, vol. 36, n° 12, p. 3882–3884. doi: 10.1093/bioinformatics/btaa250

Article (Published version)

Identifiers

PID : unige:139349
DOI : 10.1093/bioinformatics/btaa250
PMID : 32311023

Journal ISSN1367-4803

309views

0downloads

Creation21/07/2020 15:15:00

First validation21/07/2020 15:15:00

Update time17/01/2025 16:28:47

Status update17/01/2025 16:28:47

Last indexation17/01/2025 16:47:45