Scientific article

English

Phigaro: high-throughput prophage sequence annotation

ContributorsStarikova, Elizaveta V; Tikhonova, Polina O; Prianichnikov, Nikita A; Rands, Christopher; Zdobnov, Evgeny; Ilina, Elena N; Govorun, Vadim M

Published inBioinformatics, vol. 36, no. 12, p. 3882-3884

Publication date2020

Abstract

Phigaro is a standalone command-line application that is able to detect prophage regions taking raw genome and metagenome assemblies as an input. It also produces dynamic annotated 'prophage genome maps' and marks possible transposon insertion spots inside prophages. It is applicable for mining prophage regions from large metagenomic datasets.

Affiliation

Faculté de médecine / Section de médecine fondamentale / Département de médecine génétique et développement

Research group

Génomique Evolutionnaire Computationnelle (830)

Funding

Swiss National Science Foundation - Understanding the virome's role in the spread of antibiotic resistance through meta-analysis of human microbiomes [IZLRZ3_163863]

Citation (ISO format)

STARIKOVA, Elizaveta V et al. Phigaro: high-throughput prophage sequence annotation. In: Bioinformatics, 2020, vol. 36, n° 12, p. 3882–3884. doi: 10.1093/bioinformatics/btaa250

Article (Published version)

accessLevelRestricted

Identifiers

PID : unige:139349
DOI : 10.1093/bioinformatics/btaa250
PMID : 32311023

ISSN of the journal1367-4803

207views

0downloads

Creation07/21/2020 3:15:00 PM

First validation07/21/2020 3:15:00 PM

Update time03/15/2023 10:24:32 PM

Status update03/15/2023 10:24:31 PM

Last indexation08/30/2023 11:18:11 PM