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Title

Outbreak analytics: a developing data science for informing the response to emerging pathogens

Authors
Baidjoe, Amrish
Kamvar, Zhian N
Cori, Anne
Durski, Kara
Edmunds, W John
Eggo, Rosalind M
Funk, Sebastian
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Published in Philosophical Transactions of the Royal Society. B, Biological Sciences. 2019, vol. 374, no. 1776, p. 20180276
Abstract Despite continued efforts to improve health systems worldwide, emerging pathogen epidemics remain a major public health concern. Effective response to such outbreaks relies on timely intervention, ideally informed by all available sources of data. The collection, visualization and analysis of outbreak data are becoming increasingly complex, owing to the diversity in types of data, questions and available methods to address them. Recent advances have led to the rise of outbreak analytics, an emerging data science focused on the technological and methodological aspects of the outbreak data pipeline, from collection to analysis, modelling and reporting to inform outbreak response. In this article, we assess the current state of the field. After laying out the context of outbreak response, we critically review the most common analytics components, their inter-dependencies, data requirements and the type of information they can provide to inform operations in real time. We discuss some challenges and opportunities and conclude on the potential role of outbreak analytics for improving our understanding of, and response to outbreaks of emerging pathogens. This article is part of the theme issue 'Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control'. This theme issue is linked with the earlier issue 'Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes'.
Keywords EpidemicsInfectiousMethodsPipelineSoftwareTools
Identifiers
PMID: 31104603
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Research group Groupe Laurent Kaiser (virologie clinique) (668)
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POLONSKY, Jonathan Aaron et al. Outbreak analytics: a developing data science for informing the response to emerging pathogens. In: Philosophical Transactions of the Royal Society. B, Biological Sciences, 2019, vol. 374, n° 1776, p. 20180276. doi: 10.1098/rstb.2018.0276 https://archive-ouverte.unige.ch/unige:135815

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Deposited on : 2020-05-15

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