Viral metagenomics in the clinical realm: lessons learned from a swiss-wide ring trial

Article Article scientifique Article Viral metagenomics in the clinical realm: lessons learned from a swiss-wide ring trial eng 2019 author Junier Thomas 645994 author Huber M author Schmutz S author Kufner V author Zagordi O author Neuenschwander Sarah 776566 author Ramette A author Kubacki J author Bachofen C author Qi W author Laubscher Florian 748134 author Cordey Samuel 507357 author Kaiser Laurent 28229 author Beuret C author Barbié V author Fellay J author Lebrand Aitana 860986 655 10.3390/genes10090655 31466373 2073-4425 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770386/ Shotgun metagenomics using next generation sequencing (NGS) is a promising technique to analyze both DNA and RNA microbial material from patient samples. Mostly used in a research setting, it is now increasingly being used in the clinical realm as well, notably to support diagnosis of viral infections, thereby calling for quality control and the implementation of ring trials (RT) to benchmark pipelines and ensure comparable results. [...] EQA External quality assessment Quality control Ring trial Viral metagenomics Dewey 616 56 Département de médecine 221 false 400 Virologie clinique 668 https://zenodo.org/record/3354459?token=eyJhbGciOiJIUzUxMiIsImV4cCI6MTU2NzExNTk5OSwiaWF0IjoxNTY0NDc3MDIxfQ.eyJkYXRhIjp7InJlY2lkIjozMzU0NDU5fSwiaWQiOjM2MjcsInJuZCI6ImQxZDQxM2UyIn0.HMiY7PYbTk2pAXiFJqLJDJtqaBeRxsc-vt47AUKmjXrZwtXwYP4gfLeIziSYtWGpjKKcRJwMO3fN#.YbcDZd_jLg4 Genes 10 9 f12b698a-e089-4940-8592-f4398af17c13 Article (Published version) Public TJunier_Viral_metagenomics_in_clinical_realm_Lessons_learned_from_Swiss-Wide_Ring_Trial.pdf 933366 application/pdf CC BY 053692ef-db41-40dd-8495-4ab507fc445a Supplemental data Public genes-10-00655-s001.zip 2042942 application/zip CC BY openAccess Faculté de médecine / Section de médecine clinique / Département de médecine

Title	Published in	Access level	OA Policy	Year	Views	Downloads

Viral metagenomics in the clinical realm: lessons learned from a swiss-wide ring trial	Genes			2019	255	200

Archive ouverte UNIGE

Neuenschwander, Sarah