Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

Article Article scientifique Article Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase eng 2009 collaborator Gaudet Pascale 739115 collaborator Lane Lydie 0000-0002-9818-3030 639317 collaborator Bridge Alan James 561691 collaborator Poux Sylvain 29532 collaborator Auchincloss Damay Andréa 29803 collaborator Axelsen Kristian Buhl 516917 collaborator Braconi Quintaje Silvia 28136 collaborator Boutet Emmanuel 639269 collaborator Coudert Elisabeth 639263 collaborator Lima Wanessa Cristina 641557 Wanessa Cristina Du Fresne Von Hohenesche collaborator De Oliveira Lima Tania 639265 collaborator Duvaud Séverine 640853 collaborator Farriol-Mathis Nathalie 29503 collaborator Ferro Rojas Serenella 22439 collaborator Feuermann Marc 556431 collaborator Gateau Alain 114432 collaborator Hinz Ursula 639306 collaborator Hulo Chantal 29027 collaborator James Janet 27059 collaborator Jimenez Silvia 793858 collaborator Jungo Florence 639312 collaborator Keller Guillaume Bertrand 90403 collaborator Le Mercier Philippe 514147 collaborator Lieberherr Damien 639318 collaborator Moinat-Stuenkel Ann Madelaine 22431 collaborator Pedruzzi Ivo 134376 collaborator Rivoire Catherine 89392 collaborator Roechert Bernd 680483 collaborator Schneider Michel 639335 collaborator Tognolli Michael 46115 collaborator Bougueleret Lydie 639268 collaborator Bairoch Amos Marc 0000-0003-2826-6444 21964 bap016 10.1093/database/bap016 20157489 1758-0463 UniProtKB/Swiss-Prot, a curated protein database, and dictyBase, the Model Organism Database for Dictyostelium discoideum, have established a collaboration to improve data sharing. One of the major steps in this effort was the 'Dicty annotation marathon', a week-long exercise with 30 annotators aimed at achieving a major increase in the number of D. discoideum proteins represented in UniProtKB/Swiss-Prot. The marathon led to the annotation of over 1000 D. discoideum proteins in UniProtKB/Swiss-Prot. Concomitantly, there were a large number of updates in dictyBase concerning gene symbols, protein names and gene models. This exercise demonstrates how UniProtKB/Swiss-Prot can work in very close cooperation with model organism databases and how the annotation of proteins can be accelerated through those collaborations. Dewey 576 Dewey 610 49 Section de médecine fondamentale 21 false 57 Calipho 80 Database 2009 01c9564d-b8a8-41e8-918f-30d848062411 Article (Published version) Public pub_167_20157489.pdf 720201 application/pdf openAccess Faculté de médecine / Section de médecine fondamentale

Title	Published in	Year	Views	Downloads

Animal Toxins: How is Complexity Represented in Databases?	Toxins	2010	555	500
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase	Database	2009	716	521
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase	Toxicon	2005	695	0

Archive ouverte UNIGE

Jungo, Florence