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Functional implications from the Cid1 poly(U) polymerase crystal structure

Published in Structure. 2012, vol. 20, no. 6, p. 977-86
Abstract In eukaryotes, mRNA degradation begins with poly(A) tail removal, followed by decapping, and the mRNA body is degraded by exonucleases. In recent years, the major influence of 3'-end uridylation as a regulatory step within several RNA degradation pathways has generated significant attention toward the responsible enzymes, which are called poly(U) polymerases (PUPs). We determined the atomic structure of the Cid1 protein, the founding member of the PUP family, in its UTP-bound form, allowing unambiguous positioning of the UTP molecule. Our data also suggest that the RNA substrate accommodation and product translocation by the Cid1 protein rely on local and global movements of the enzyme. Supplemented by point mutations, the atomic model is used to propose a catalytic cycle. Our study underlines the Cid1 RNA binding properties, a feature with critical implications for miRNAs, histone mRNAs, and, more generally, cellular RNA degradation.
Keywords Amino Acid MotifsAmino Acid SequenceCatalytic DomainConserved SequenceCrystallography, X-RayHydrogen BondingModels, MolecularMolecular Sequence DataNucleotidyltransferases/chemistryProtein BindingRNA, Fungal/chemistrySchizosaccharomyces/enzymologySchizosaccharomyces pombe Proteins/chemistrySubstrate SpecificitySurface PropertiesUridine Triphosphate/chemistry
PMID: 22608966
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Swiss National Science Foundation: 31003A_124909
Swiss National Science Foundation: 31003A_140924
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MUNOZ TELLO, Paola Andréa, GABUS, Caroline, THORE, Stéphane. Functional implications from the Cid1 poly(U) polymerase crystal structure. In: Structure, 2012, vol. 20, n° 6, p. 977-86. doi: 10.1016/j.str.2012.04.006 https://archive-ouverte.unige.ch/unige:24406

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Deposited on : 2012-12-11

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