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AraC functional suppressors of mutations in the C-terminal domain of the RpoA subunit of the Escherichia coli RNA polymerase

Published inMicroorganisms, vol. 12, no. 9, 1928
Publication date2024-09-23
Abstract

In E. coli, transcriptional activation is often mediated by the C-terminal domain of RpoA, the α subunit of RNA polymerase. Random mutations that prevent activation of the arabinose PBAD promoter are clustered in the RpoA C-terminal domain (α-CTD). We have isolated functional suppressors of rpoA α-CTD mutations that map to araC, the main transcriptional regulator of ara genes, or to the PBAD promoter. No mutation was found in the DNA regulatory region between araC and PBAD. Most suppressors that improve PBAD transcription are localized to the N-terminal domain of AraC. One class of araC mutations generates substitutions in the core of the N-terminal domain, suggesting that they affect its conformation. Other suppressors localize to the flexible N-terminal arm of AraC. Some, but not all, suppressors confer an arabinose constitutive phenotype. Suppression by both classes of araC mutations requires the α-CTD to stimulate expression from PBAD. Surprisingly, in rpoA+ strains lacking Crp, the cAMP receptor protein, these araC mutations largely restore arabinose gene expression and can essentially bypass Crp activation. Thus, the N terminal domain of AraC exhibits at least three distinct activities: dimerization, arabinose binding, and transcriptional activation. Finally, one mutation maps to the AraC C-terminal domain and can synergize with AraC mutations in the N-terminal domain.

Keywords
  • Arabinose operon
  • Genetic suppression
  • Transcription activation
  • PBAD promoter
Citation (ISO format)
BELIN, Dominique, COSTAFROLAZ, Jordan, SILVA, Filo. AraC functional suppressors of mutations in the C-terminal domain of the RpoA subunit of the Escherichia coli RNA polymerase. In: Microorganisms, 2024, vol. 12, n° 9, p. 1928. doi: 10.3390/microorganisms12091928
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Identifiers
Additional URL for this publicationhttps://www.mdpi.com/2076-2607/12/9/1928
Journal ISSN2076-2607
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