en
Scientific article
Open access
English

Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks

Published inPLOS computational biology, vol. 14, no. 7, p. e1006317
Publication date2018-07-20
First online date2018-07-20
Abstract

In mating fission yeast cells, sensing and response to extracellular pheromone concentrations occurs through an exploratory Cdc42 patch that stochastically samples the cell cortex before stabilizing towards a mating partner. Active Ras1 (Ras1-GTP), an upstream regulator of Cdc42, and Gap1, the GTPase-activating protein for Ras1, localize at the patch. We developed a reaction-diffusion model of Ras1 patch appearance and disappearance with a positive feedback by a Guanine nucleotide Exchange Factor (GEF) and Gap1 inhibition. The model is based on new estimates of Ras1-GDP, Ras1-GTP and Gap1 diffusion coefficients and rates of cytoplasmic exchange studied by FRAP. The model reproduces exploratory patch behavior and lack of Ras1 patch in cells lacking Gap1. Transition to a stable patch can occur by change of Gap1 rates constants or local increase of the positive feed-back rate constants. The model predicts that the patch size and number of patches depend on the strength of positive and negative feedbacks. Measurements of Ras1 patch size and number in cells overexpressing the Ras1 GEF or Gap1 are consistent with the model.

eng
Affiliation Not a UNIGE publication
Funding
Citation (ISO format)
KHALILI, Bita et al. Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks. In: PLOS computational biology, 2018, vol. 14, n° 7, p. e1006317. doi: 10.1371/journal.pcbi.1006317
Main files (1)
Article (Published version)
Identifiers
ISSN of the journal1553-734X
22views
5downloads

Technical informations

Creation02/03/2024 10:32:08 AM
First validation02/05/2024 11:30:38 AM
Update time02/05/2024 11:30:38 AM
Status update02/05/2024 11:30:38 AM
Last indexation05/06/2024 5:52:57 PM
All rights reserved by Archive ouverte UNIGE and the University of GenevaunigeBlack