Doctoral thesis
OA Policy
English

Deep Learning for Histopathology Image Analysis From Heterogeneous and Multimodal Data Sources

Number of pages166
Imprimatur date2021-09-16
Defense date2021-06-22
Abstract

In computational pathology, deep learning techniques have outperformed classical algorithms and hand-engineered features by leveraging large amounts of costly annotated data to train models that automatically learn relevant features for the tasks. Barriers to the successful application and design of deep learning approaches in computational pathology include: 1) The need for large image datasets with costly annotations to train deep learning models. 2) Visual variability of the images, which degrade the performance of models trained with homogeneous datasets. Finally, deep learning models in computational pathology usually leave out semantic information from pathology reports and other modalities that are complementary sources of information. This thesis contributes to solving these barriers by setting the following objectives: 1) To reduce the need for expensive pathologists’ annotations. 2) To evaluate and propose methods to overcome the visual heterogeneity of the images. 3) To exploit the semantic information from scientific literature and pathology reports.

Keywords
  • Deep learning
  • Machine learning
  • Computer Vision
  • Histopathology
  • Computational Pathology
  • Natural language processing
Funding
  • European Commission - EXtreme-scale Analytics via Multimodal Ontology Discovery & Enhancement [825292]
Citation (ISO format)
OTALORA MONTENEGRO, Juan Sebastian. Deep Learning for Histopathology Image Analysis From Heterogeneous and Multimodal Data Sources. Doctoral Thesis, 2021. doi: 10.13097/archive-ouverte/unige:160358
Main files (1)
Identifiers
442views
56downloads

Technical informations

Creation04/20/2022 3:58:00 PM
First validation04/20/2022 3:58:00 PM
Update time03/14/2024 8:56:41 AM
Status update03/14/2024 8:56:41 AM
Last indexation11/01/2024 1:28:59 AM
All rights reserved by Archive ouverte UNIGE and the University of GenevaunigeBlack