Département de biologie moléculaire

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2018

Scientific Articles

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Body clocks: Time for the Nobel PrizeDibner, Charna; Schibler, Ulrich;
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Decrease in plasma membrane tension triggers PtdIns(4,5)P2 phase separation to inactivate TORC2Riggi, Margot; Niewola-Staszkowska, Karolina; Chiaruttini, Nicolas; Colom Diego, Adai; ... Loewith, Robbie Joséph
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Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1Zhang, Lin; Pu, Hua; Duan, Zhikun; Li, Yonghong; ... Peng, Lianwei
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Singlet oxygen-triggered chloroplast-to-nucleus retrograde signalling pathways: an emerging perspectiveDogra, Vivek; Rochaix, Jean-David; Kim, Chanhong;
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Specific labeling of mitochondria of Chlamydomonas with cationic helicene fluorophoresBauer, Christoph Ruediger; Duwald, Romain; Labrador Beltran, Maria Géraldine; Pascal, Simon; ... Rochaix, Jean-David

Doctoral Thesis

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Atoh7 controls mitochondrial activity along the pathway converting pre-committed progenitors into retinal ganglion cells in retina adapted for high acuity visionBrodier, Laurent;
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Characterization of Ypk1 and Fpk1 downstream targets in TORC2 signalling pathwayBourgoint, Clelia;
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Effects of physiological overexpression of SIRT6 in metabolism and cancerMaciel Ioris, Rafael;
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HP1 protein Chp2 selectively recruits nucleosome remodeler through non-canonical interactionLeopold, Karoline;
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In vitro reconstitution of Slm1 mediated TORC2 activationVegunta, Yogesh;
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On start and pause of replication forkShyian, Maksym;
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Role of co-activators and promoter architecture in transcription of yeast protein-coding genesBruzzone, Maria;
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The AAA ATPase p97: from the use of genetics to the development of new chemical tools to study its functionsFiguerola Conchas, Ainoa;

2017

Scientific Articles

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A Light Harvesting Complex-Like Protein in Maintenance of Photosynthetic Components in ChlamydomonasZhao, Lei; Cheng, Dongmei; Huang, Xiahe; Chen, Mei; ... Huang, Fang
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A pathway of targeted autophagy is induced by DNA damage in budding yeastEapen, Vinay V; Waterman, David P; Bernard, Amélie; Schiffmann, Nathan; ... Haber, James E
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Capturing Structural Heterogeneity in Chromatin FibersEkundayo, Babatunde; Richmond, Timothy J.; Schalch, Thomas;
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Cryo-EM structure of Saccharomyces cerevisiae target of rapamycin complex 2Karuppasamy, Manikandan; Kusmider, Beata; Oliveira, Taiana M; Gaubitz, Christl; ... Schaffitzel, Christiane
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Identification of the molecular dysfunction caused by glutamate dehydrogenase S445L mutation responsible for hyperinsulinism/hyperammonemiaGrimaldi, Mariagrazia; Karaca Emre, Melis; Latini, Livia; Brioudes, Estelle; ... Maechler, Pierre
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Reciprocal Regulation of Target of Rapamycin Complex 1 and Potassium AccumulationPrimo, Cecilia; Ferri-Blázquez, Alba; Loewith, Robbie Joséph; Yenush, Lynne;
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Structure of centromere chromatin: from nucleosome to chromosomal architectureSchalch, Thomas; Steiner, Florian;
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Tensing Up for Lipid Droplet FormationRoux, Aurélien; Loewith, Robbie Joséph;
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The Pyrenoid: An Overlooked Organelle Comes out of AgeRochaix, Jean-David;
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TORC1 organized in inhibited domains (TOROIDs) regulate TORC1 activityProuteau, Manoel; Desfosses, Ambroise; Sieben, Christian; Bourgoint, Clelia; ... Loewith, Robbie Joséph

Professional Articles

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Higher order chromatin structures are taking shapeSchalch, Thomas;

Doctoral Thesis

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Architecture of the Snf2/HDAC containing repressor complex (SHREC) and its impact on gene silencingBrugger, Christiane;
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Circadian regulation of human skeletal muscle function in physiology and insulin resistancePerrin, Laurent;
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Functional dissection of TMED proteins in colon cancer metastasisMishra, Sonakshi;
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Mechanisms of oncogene-induced DNA replication stressMacheret, Morgane;
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Structural and biochemical studies on DNA packaging and replicationEkundayo, Babatunde;
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The Role of TOR Complex 2 in the Maintenance of Plasma Membrane Tension HomeostasisRiggi, Margot;
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UVR8-based optogenetics and new model systems to study the DNA damage responseCrefcoeur, Remco Paul;

2016

Scientific Articles

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A Nucleus-Encoded Chloroplast Phosphoprotein Governs Expression of the Photosystem I Subunit PsaC in Chlamydomonas reinhardtiiDouchi, Damien; Qu, Yujiao; Longoni, Paolo; Legendre Lefebvre, Linnka; ... Goldschmidt-Clermont, Michel P.
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A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtiiLegendre Lefebvre, Linnka; Reifschneider, Olga; Kollipara, Laxmikanth; Sickmann, Albert; ... Goldschmidt-Clermont, Michel P.
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A Signaling Lipid Associated with Alzheimer's Disease Promotes Mitochondrial DysfunctionKennedy, Michael A; Moffat, Tia C; Gable, Kenneth; Ganesan, Suriakarthiga; ... Baetz, Kristin
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Activation of the Stt7/STN7 Kinase through Dynamic Interactions with the Cytochrome b6f ComplexShapiguzov, Alexey; Chai, Xin; Fucile, Geoffrey; Longoni, Paolo; ... Rochaix, Jean-David
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Chloroplast retrograde signal regulates floweringFeng, Peiqiang; Guo, Hailong; Chi, Wei; Chai, Xin; ... Zhang, Lixin
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Compartmentalization of the endoplasmic reticulum in the early C. elegans embryosLee, Zuo Yen; Prouteau, Manoel; Gotta, Monica; Barral, Yves;
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DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4Chi, Wei; Li, Jing; He, Baoye; Chai, Xin; ... Zhang, Lixin
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Dual action antifungal small molecule modulates multidrug efflux and TOR signalingShekhar-Guturja, Tanvi; Gunaherath, G M Kamal B; Wijeratne, E M Kithsiri; Lambert, Jean-Philippe; ... Cowen, Leah E
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Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolutionChen, Mei; Zhang, Jin; Zhao, Lei; Xing, Jiale; ... Huang, Fang
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Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8Binkert, Melanie; Crocco, Carlos; Ekundayo, Babatunde; Lau, Kelvin; ... Ulm, Roman
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SHREC Silences Heterochromatin via Distinct Remodeling and Deacetylation ModulesJob, Godwin; Brugger, Christiane; Xu, Tao; Lowe, Brandon R.; ... Schalch, Thomas
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TOR Complexes and the Maintenance of Cellular HomeostasisEltschinger, Sandra; Loewith, Robbie Joséph;
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TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiaeYerlikaya, Seda; Meusburger, Madeleine; Kumari, Romika; Huber, Alexandre; ... Loewith, Robbie Joséph
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TORC2 Structure and FunctionGaubitz, Christl; Prouteau, Manoel; Kusmider, Beata; Loewith, Robbie Joséph;

Doctoral Thesis

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Biofunctional characterisation of titanium oxynitride coatings for endosseous applicationsMoussa, Mira;
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Characterization of a novel checkpoint coordinating replication completion with mitosis onsetSobkowiak, Katarzyna;
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Genomic characterization of basal cell carcinoma of the skinBonilla Bustillo, Ximena;
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Mechanisms underlying genomic instability in human cancersSotiriou, Sotirios;
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Small molecules as tool compounds to probe Target of Rapamycin (TOR) signalingNiewola-Staszkowska, Karolina;
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Structural studies by X-ray crystallography: from enzymatic reactions in vitamin B1 biosynthesis to PPR protein design and functionCoquille, Sandrine Claire;
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Studies on S445L GDH mutation associated with both Hyperinsulinism/Hyperammonemia syndrome and epilepsyGrimaldi, Mariagrazia;
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The role of junctate in the regulation of phagocytosisGuido, Danièle;
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The transcription factor Sfp1 regulates growth and division in the yeast Saccharomyces cerevisiaeTomassetti, Susanna;

2015

Scientific Articles

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A nucleus-encoded chloroplast protein regulated by iron availability governs expression of the photosystem I subunit PsaA in Chlamydomonas reinhardtiiLegendre Lefebvre, Linnka; Choquet, Yves Marcel; Kuras, Richard; Loubery, Sylvain Philippe; ... Goldschmidt-Clermont, Michel P.
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Circadian timing of metabolism in animal models and humansDibner, Charna; Schibler, Ulrich;
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Conditional repression of essential chloroplast genes: Evidence for new plastid signaling pathwaysRochaix, Jean-David; Ramundo, Silvia;
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Diet-Induced Unresolved ER Stress Hinders KRAS-Driven Lung TumorigenesisRamadori, Giorgio; Konstantinidou, Georgia; Venkateswaran, Niranjan; Biscotti, Tommasina; ... Coppari, Roberto
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Molecular Basis of the Rapamycin Insensitivity of Target Of Rapamycin Complex 2Gaubitz, Christl; Oliveira, Taiana M; Prouteau, Manoel; Leitner, Alexander; ... Loewith, Robbie Joséph
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Sharing light between two photosystems: mechanism of state transitionsGoldschmidt-Clermont, Michel P.; Bassi, Roberto;
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State transition7-dependent phosphorylation is modulated by changing environmental conditions, and its absence triggers remodeling of photosynthetic protein complexesBergner, Sonja Verena; Scholz, Martin; Trompelt, Kerstin; Barth, Johannes; ... Hippler, Michael
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Target of Rapamycin Complex 2 Regulates Actin Polarization and Endocytosis via Multiple PathwaysRispal, Delphine; Eltschinger, Sandra; Stahl, Michael; Vaga, Stefania; ... Loewith, Robbie Joséph

Book Chapters

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Controlling Expression of Genes in the Unicellular Alga Chlamydomonas reinhardtii with a Vitamin-Repressible RiboswitchRamundo, Silvia; Rochaix, Jean-David;

Doctoral Thesis

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Functional characterization and genomic analysis of stem cell organoids derived from adult mouse gallbladder and intestine tissuesLugli, Natalia;
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Molecular mechanisms of RIG-I inhibition by LGP2Guerra, Jessica;
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Structural and functional characterization of rapamycin-resistant TORC2Gaubitz, Christl;
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Structural studies of proteins involved in mitochondrial RNA processing in Trypanosome bruceiRajappa, Lional;
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The role of immediate early transcription factors in the regulation of peripheral circadian clocksHui, Ka Yi;
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TORC2 downstream signaling in Saccharomyces cerevisiaeEltschinger, Sandra;
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Unravelling the target specificity of the major AGC kinases in Saccharomyces cerevisiaePerepelkina, Mariya;

2014

Scientific Articles

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A critical switch in the enzymatic properties of the Cid1 protein deciphered from its product-bound crystal structureMunoz Tello, Paola Andréa; Gabus, Caroline; Thore, Stéphane;
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A neurotoxic glycerophosphocholine impacts PtdIns-4, 5-bisphosphate and TORC2 signaling by altering ceramide biosynthesis in yeastKennedy, Michael A; Gable, Kenneth; Niewola-Staszkowska, Karolina; Abreu, Susana; ... Baetz, Kristin
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An artificial PPR scaffold for programmable RNA recognitionCoquille, Sandrine Claire; Filipovska, Aleksandra; Chia, Tiongsun; Rajappa, Lional; ... Rackham, Oliver
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Complex behavior: from cannibalism to suicide in the vitamin B1 biosynthesis worldFitzpatrick, Thérésa Bridget; Thore, Stéphane;
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On the complexity of chloroplast RNA metabolism: psaA trans-splicing can be bypassed in chlamydomonasLegendre Lefebvre, Linnka; Merendino, Livia; Rivier, Cristian Pablo; Goldschmidt-Clermont, Michel P.;
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RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thalianaChi, Wei; He, Baoye; Manavski, Nikolay; Mao, Juan; ... Zhang, Lixin
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Roles for PI(3,5)P2 in nutrient sensing through TORC1Jin, Natsuko; Mao, Kai; Jin, Yui; Tevzadze, Gela Guram; ... Weisman, Lois S
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Separation of membrane protein complexes by native LDS-PAGEArnold, Janine; Shapiguzov, Alexey; Fucile, Geoffrey; Rochaix, Jean-David; ... Eichacker, Lutz Andreas
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Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of ChlamydomonasLoizeau, Karen; Qu, Yujiao; Depp, Sébastien; Fiechter, Vincent; ... Goldschmidt-Clermont, Michel P.
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Steroid Receptor RNA Activator (SRA) Modification by the Human Pseudouridine Synthase 1 (hPus1p): RNA Binding, Activity, and Atomic ModelHuet, Tiphaine; Miannay, François-Alexandre; Patton, Jeffrey R; Thore, Stéphane;
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Systematic lipidomic analysis of yeast protein kinase and phosphatase mutants reveals novel insights into regulation of lipid homeostasisda Silveira Dos Santos, Aline Xavier; Riezman, Isabelle; Aguilera-Romero, Maria Auxiliadora; David, Fabrice Pierre André; ... Riezman, Howard
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The crystal structure of the Split End protein SHARP adds a new layer of complexity to proteins containing RNA recognition motifsArieti, Fabiana; Gabus, Caroline; Tambalo, Margherita; Huet, Tiphaine; ... Thore, Stéphane

Doctoral Thesis

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Characterisation of HigBA, a Toxin-Antitoxin system in Caulobacter crescentusMartins, Daniel;
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Construction and functional comparison of new antibody-based formats with multiple specificities for the exploration of innovative therapeutic approachesMueller, Ulrike;
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Investigation of Caulobacter crescentus cell cycle regulationFumeaux, Coralie;
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Regulation of the ribosomal protein gene transcriptional network in budding yeastKnight, Britta;
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RNF168-mediated H2AX ubiquitination recruits 53BP1 to DNA double-strand breaksKocylowski, Maciej;
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Structural and functional studies of poly(U) polymerasesMunoz Tello, Paola Andréa;
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Structural studies of RNA-binding domainsArieti, Fabiana;

2013

Scientific Articles

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Growth control: function follows formLoewith, Robbie Joséph;
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High-resolution crystal structure of the eukaryotic HMP-P synthase (THIC) from Arabidopsis thalianaCoquille, Sandrine Claire; Roux, Céline; Mehta, Angad; Begley, Tadhg P.; ... Thore, Stéphane
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Real-time recording of circadian liver gene expression in freely moving mice reveals the phase-setting behavior of hepatocyte clocksSaini, Camille; Liani, André; Curie, Thomas; Gos, Pascal; ... Schibler, Ulrich
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The Junctional Proteins Cingulin and Paracingulin Modulate the Expression of Tight Junction Protein Genes through GATA-4Guillemot, Laurent Michel; Spadaro, Domenica; Citi, Sandra;
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TORC2 signaling pathway guarantees genome stability in the face of DNA strand breaksShimada, Kenji; Filipuzzi, Ireos; Stahl, Michael; Helliwell, Stephen B; ... Gasser, Susan M
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Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cellsCrefcoeur, Remco Paul; Yin, Ruohe; Ulm, Roman; Halazonetis, Thanos;

Doctoral Thesis

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A conformational switch regulates p53 DNA bindingEmamzadah, Soheila;
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Assessing the phenotypic and molecular impacts of merging different epigenomes in Arabidopsis thalianaDapp, Mélanie;
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Development of Dual-targeting Monoclonal Antibodies Against CX3CL1/CX3CR1 and CCL2/CCR2 AxesMusolino, Najia;
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HIV-1 innate immune detection and evasionReinhard, Christian;
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Immune protection and immune pathogenesis of viral infectionsRemy, Mélissa;
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