Département de biologie moléculaire

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2021

Scientific Articles

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Circadian hepatocyte clocks keep synchrony in the absence of a master pacemaker in the suprachiasmatic nucleus or other extrahepatic clocksSinturel, Flore; Gos, Pascal; Petrenko, Volodymyr; Hagedorn, Claudia; ... Schibler, Ueli
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Flipper Probes for the CommunityAssies, Léa; Garcia, José; Piazzolla, Francesca; Sanchez, Samantha; ... Matile, Stefan
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Identification of a Covalent Importin-5 Inhibitor, Goyazensolide, from a Collective Synthesis of FuranoheliangolidesLiu, Weilong; Patouret, Rémi; Barluenga Badiola, Sofia; Plank, Michaël; ... Winssinger, Nicolas
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Passive coupling of membrane tension and cell volume during active response of cells to osmosisRoffay, Chloé; Molinard, Guillaume; Kim, Kyoohyun; Urbanska, Marta; ... Roux, Aurélien
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Suprastapled Peptides: Hybridization-Enhanced Peptide Ligation and Enforced α-Helical Conformation for Affinity Selection of Combinatorial LibrariesSabale, Pramod Madhavrao; Imiolek, Mateusz Lukasz; Raia, Pierre; Barluenga Badiola, Sofia; Winssinger, Nicolas
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Transgenerational inheritance of centromere identity requires the CENP-A N-terminal tail in the C. elegans maternal germ lineProsee, Reinier; Wenda, Joanna; Ozdemir, Isa; Gabus, Caroline; ... Steiner, Florian

Doctoral Thesis

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Insights into Genome Stability and Ageing from the DNA Replication Origin Firing Profiles of Regenerating Mouse LiversRossetti, Giacomo;
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KNL-2 functions in centromere maintenance and chromosome condensation in c. elegans embryosWenda, Joanna;
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The Conserved Role of METTL16 m6A Methyltransferase in Gene Expression RegulationMendel, Mateusz;
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Upstream Regulation of TORC2 SignallingStankova, Monika;

2020

Scientific Articles

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Annexin V expression on CD4+ T cells with regulatory functionBollinger, Annalena; Bollinger, Thomas; Rupp, Jan; Shima, Kensuke; ... Seebach, Jorg Dieter
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Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9Plank, Michaël; Perepelkina, Mariya; Muller, Markus Johann; Vaga, Stefania; ... Loewith, Robbie Joséph
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Cooperative binding of the tandem WW domains of PLEKHA7 to PDZD11 promotes conformation-dependent interaction with tetraspanin 33Rouaud, Florian; Tessaro, Francesca; Aimaretti, Laura; Scapozza, Leonardo; Citi, Sandra
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mTERF8, a Member of the Mitochondrial Transcription Termination Factor Family, Is Involved in the Transcription Termination of Chloroplast Gene psbJXiong, Hai-Bo; Wang, Jing; Huang, Chao; Rochaix, Jean-David; ... Yang, Zhong-Nan
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Structural Insights into TOR SignalingTafur Petrozzi, Lucas; Kefauver, Jennifer Marie; Loewith, Robbie Joséph;
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The Aspartic Protease Ddi1 Contributes to DNA-Protein Crosslink Repair in YeastSerbyn, Nataliia; Noireterre, Audrey; Bagdiul, Ivona; Plank, Michaël; ... Stutz, Françoise
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The flipside of the TOR coin – TORC2 and plasma membrane homeostasis at a glanceRiggi, Margot; Kusmider, Beata; Loewith, Robbie Joséph;
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WRKY33-PIF4 loop is required for the regulation of H2O2 homeostasisSun, Yijing; Liu, Zhixin; Guo, Jinggong; Zhu, Zhinan; ... Sun, Xuwu

Doctoral Thesis

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Bridging Generations: Centromere dynamics in the C. elegans germ lineProsee, Reinier;
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Involvement of RecQL4 in dna replication and mitotic DNA synthesis in human cellsPadayachy, Laura;
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Spatiotemporal characterization of DNA replication in the C. elegans embryoStrobino, Maude;
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Structural view of TORC2 signalingKusmider, Beata;

2018

Scientific Articles

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Body clocks: Time for the Nobel PrizeDibner, Charna; Schibler, Ulrich;
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Decrease in plasma membrane tension triggers PtdIns(4,5)P2 phase separation to inactivate TORC2Riggi, Margot; Niewola-Staszkowska, Karolina; Chiaruttini, Nicolas; Colom Diego, Adai; ... Loewith, Robbie Joséph
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Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1Zhang, Lin; Pu, Hua; Duan, Zhikun; Li, Yonghong; ... Peng, Lianwei
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Regulation of Cellular Metabolism through Phase Separation of EnzymesProuteau, Manoel; Loewith, Robbie Joséph;
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Singlet oxygen-triggered chloroplast-to-nucleus retrograde signalling pathways: an emerging perspectiveDogra, Vivek; Rochaix, Jean-David; Kim, Chanhong;
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Specific labeling of mitochondria of Chlamydomonas with cationic helicene fluorophoresBauer, Christoph Ruediger; Duwald, Romain; Labrador Beltran, Maria Géraldine; Pascal, Simon; ... Rochaix, Jean-David

Doctoral Thesis

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Atoh7 controls mitochondrial activity along the pathway converting pre-committed progenitors into retinal ganglion cells in retina adapted for high acuity visionBrodier, Laurent;
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Characterization of Ypk1 and Fpk1 downstream targets in TORC2 signalling pathwayBourgoint, Clelia;
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Diversity in protein post-translational modifications and their critical impacts on the lytic cycle of Toxoplasma gondiiDogga, Sunil Kumar;
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Effects of physiological overexpression of SIRT6 in metabolism and cancerMaciel Ioris, Rafael;
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HP1 protein Chp2 selectively recruits nucleosome remodeler through non-canonical interactionLeopold, Karoline;
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In vitro reconstitution of Slm1 mediated TORC2 activationVegunta, Yogesh;
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On start and pause of replication forkShyian, Maksym;
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Role of co-activators and promoter architecture in transcription of yeast protein-coding genesBruzzone, Maria;
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The AAA ATPase p97: from the use of genetics to the development of new chemical tools to study its functionsFiguerola Conchas, Ainoa;

2017

Scientific Articles

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A Light Harvesting Complex-Like Protein in Maintenance of Photosynthetic Components in ChlamydomonasZhao, Lei; Cheng, Dongmei; Huang, Xiahe; Chen, Mei; ... Huang, Fang
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A pathway of targeted autophagy is induced by DNA damage in budding yeastEapen, Vinay V; Waterman, David P; Bernard, Amélie; Schiffmann, Nathan; ... Haber, James E
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Capturing Structural Heterogeneity in Chromatin FibersEkundayo, Babatunde; Richmond, Timothy J.; Schalch, Thomas;
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Cryo-EM structure of Saccharomyces cerevisiae target of rapamycin complex 2Karuppasamy, Manikandan; Kusmider, Beata; Oliveira, Taiana M; Gaubitz, Christl; ... Schaffitzel, Christiane
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Identification of the molecular dysfunction caused by glutamate dehydrogenase S445L mutation responsible for hyperinsulinism/hyperammonemiaGrimaldi, Mariagrazia; Karaca Emre, Melis; Latini, Livia; Brioudes, Estelle; ... Maechler, Pierre
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Reciprocal Regulation of Target of Rapamycin Complex 1 and Potassium AccumulationPrimo, Cecilia; Ferri-Blázquez, Alba; Loewith, Robbie Joséph; Yenush, Lynne;
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Structure of centromere chromatin: from nucleosome to chromosomal architectureSchalch, Thomas; Steiner, Florian;
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Tensing Up for Lipid Droplet FormationRoux, Aurélien; Loewith, Robbie Joséph;
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The Pyrenoid: An Overlooked Organelle Comes out of AgeRochaix, Jean-David;
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TORC1 organized in inhibited domains (TOROIDs) regulate TORC1 activityProuteau, Manoel; Desfosses, Ambroise; Sieben, Christian; Bourgoint, Clelia; ... Loewith, Robbie Joséph

Professional Articles

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Higher order chromatin structures are taking shapeSchalch, Thomas;

Doctoral Thesis

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Architecture of the Snf2/HDAC containing repressor complex (SHREC) and its impact on gene silencingBrugger, Christiane;
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Circadian regulation of human skeletal muscle function in physiology and insulin resistancePerrin, Laurent;
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Functional dissection of TMED proteins in colon cancer metastasisMishra, Sonakshi;
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Mechanisms of oncogene-induced DNA replication stressMacheret, Morgane;
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Structural and biochemical studies on DNA packaging and replicationEkundayo, Babatunde;
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The Role of TOR Complex 2 in the Maintenance of Plasma Membrane Tension HomeostasisRiggi, Margot;
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UVR8-based optogenetics and new model systems to study the DNA damage responseCrefcoeur, Remco Paul;

2016

Scientific Articles

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A Nucleus-Encoded Chloroplast Phosphoprotein Governs Expression of the Photosystem I Subunit PsaC in Chlamydomonas reinhardtiiDouchi, Damien; Qu, Yujiao; Longoni, Paolo; Legendre Lefebvre, Linnka; ... Goldschmidt-Clermont, Michel P.
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A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtiiLegendre Lefebvre, Linnka; Reifschneider, Olga; Kollipara, Laxmikanth; Sickmann, Albert; ... Goldschmidt-Clermont, Michel P.
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A Signaling Lipid Associated with Alzheimer's Disease Promotes Mitochondrial DysfunctionKennedy, Michael A; Moffat, Tia C; Gable, Kenneth; Ganesan, Suriakarthiga; ... Baetz, Kristin
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Activation of the Stt7/STN7 Kinase through Dynamic Interactions with the Cytochrome b6f ComplexShapiguzov, Alexey; Chai, Xin; Fucile, Geoffrey; Longoni, Paolo; ... Rochaix, Jean-David
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Chloroplast retrograde signal regulates floweringFeng, Peiqiang; Guo, Hailong; Chi, Wei; Chai, Xin; ... Zhang, Lixin
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Compartmentalization of the endoplasmic reticulum in the early C. elegans embryosLee, Zuo Yen; Prouteau, Manoel; Gotta, Monica; Barral, Yves;
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DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4Chi, Wei; Li, Jing; He, Baoye; Chai, Xin; ... Zhang, Lixin
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Dual action antifungal small molecule modulates multidrug efflux and TOR signalingShekhar-Guturja, Tanvi; Gunaherath, G M Kamal B; Wijeratne, E M Kithsiri; Lambert, Jean-Philippe; ... Cowen, Leah E
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Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolutionChen, Mei; Zhang, Jin; Zhao, Lei; Xing, Jiale; ... Huang, Fang
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Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8Binkert, Melanie; Crocco, Carlos; Ekundayo, Babatunde; Lau, Kelvin; ... Ulm, Roman
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SHREC Silences Heterochromatin via Distinct Remodeling and Deacetylation ModulesJob, Godwin; Brugger, Christiane; Xu, Tao; Lowe, Brandon R.; ... Schalch, Thomas
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TOR Complexes and the Maintenance of Cellular HomeostasisEltschinger, Sandra; Loewith, Robbie Joséph;
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TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiaeYerlikaya, Seda; Meusburger, Madeleine; Kumari, Romika; Huber, Alexandre; ... Loewith, Robbie Joséph
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TORC2 Structure and FunctionGaubitz, Christl; Prouteau, Manoel; Kusmider, Beata; Loewith, Robbie Joséph;

Doctoral Thesis

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Biofunctional characterisation of titanium oxynitride coatings for endosseous applicationsMoussa, Mira;
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Characterization of a novel checkpoint coordinating replication completion with mitosis onsetSobkowiak, Katarzyna;
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Genomic characterization of basal cell carcinoma of the skinBonilla Bustillo, Ximena;
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Mechanisms underlying genomic instability in human cancersSotiriou, Sotirios;
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Small molecules as tool compounds to probe Target of Rapamycin (TOR) signalingNiewola-Staszkowska, Karolina;
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Structural studies by X-ray crystallography: from enzymatic reactions in vitamin B1 biosynthesis to PPR protein design and functionCoquille, Sandrine Claire;
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Studies on S445L GDH mutation associated with both Hyperinsulinism/Hyperammonemia syndrome and epilepsyGrimaldi, Mariagrazia;
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The role of junctate in the regulation of phagocytosisGuido, Danièle;
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The transcription factor Sfp1 regulates growth and division in the yeast Saccharomyces cerevisiaeTomassetti, Susanna;

2015

Scientific Articles

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A nucleus-encoded chloroplast protein regulated by iron availability governs expression of the photosystem I subunit PsaA in Chlamydomonas reinhardtiiLegendre Lefebvre, Linnka; Choquet, Yves Marcel; Kuras, Richard; Loubery, Sylvain Philippe; ... Goldschmidt-Clermont, Michel P.
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Circadian timing of metabolism in animal models and humansDibner, Charna; Schibler, Ulrich;
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Conditional repression of essential chloroplast genes: Evidence for new plastid signaling pathwaysRochaix, Jean-David; Ramundo, Silvia;
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Diet-Induced Unresolved ER Stress Hinders KRAS-Driven Lung TumorigenesisRamadori, Giorgio; Konstantinidou, Georgia; Venkateswaran, Niranjan; Biscotti, Tommasina; ... Coppari, Roberto
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Molecular Basis of the Rapamycin Insensitivity of Target Of Rapamycin Complex 2Gaubitz, Christl; Oliveira, Taiana M; Prouteau, Manoel; Leitner, Alexander; ... Loewith, Robbie Joséph
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Sharing light between two photosystems: mechanism of state transitionsGoldschmidt-Clermont, Michel P.; Bassi, Roberto;
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State transition7-dependent phosphorylation is modulated by changing environmental conditions, and its absence triggers remodeling of photosynthetic protein complexesBergner, Sonja Verena; Scholz, Martin; Trompelt, Kerstin; Barth, Johannes; ... Hippler, Michael
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Target of Rapamycin Complex 2 Regulates Actin Polarization and Endocytosis via Multiple PathwaysRispal, Delphine; Eltschinger, Sandra; Stahl, Michael; Vaga, Stefania; ... Loewith, Robbie Joséph

Book Chapters

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Controlling Expression of Genes in the Unicellular Alga Chlamydomonas reinhardtii with a Vitamin-Repressible RiboswitchRamundo, Silvia; Rochaix, Jean-David;

Doctoral Thesis

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Functional characterization and genomic analysis of stem cell organoids derived from adult mouse gallbladder and intestine tissuesLugli, Natalia;
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Molecular mechanisms of RIG-I inhibition by LGP2Guerra, Jessica;
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Structural and functional characterization of rapamycin-resistant TORC2Gaubitz, Christl;
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Structural studies of proteins involved in mitochondrial RNA processing in Trypanosome bruceiRajappa, Lional;
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The role of immediate early transcription factors in the regulation of peripheral circadian clocksHui, Ka Yi;
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