Département de biochimie

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2022

Scientific Articles

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A role for Flower and cell death in controlling morphogen gradient scalingMartinez Merino, Marisa; Seum, Carole; Dubois, Marine; Gonzalez Gaitan, Marcos;
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Ceramide biosynthesis is critical for establishment of the intracellular niche of Toxoplasma gondiiNyonda, Mary; Kloehn, Joachim; Sosnowski, Piotr; Krishnan, Aarti; ... Soldati-Favre, Dominique
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Chemo‐ and Regioselective Multiple C(sp2)−H Insertions of Malonate Metal Carbenes for Late‐Stage Functionalizations of AzahelicenesNikolova, Yana; Fabri, Bibiana; Moneva Lorente, Pau; Guarnieri Ibanez, Alejandro José; ... Lacour, Jérôme
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Condensation of Ede1 promotes the initiation of endocytosisKozak, Mateusz; Kaksonen, Marko;
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Cyclic Thiosulfonates for Thiol-Mediated Uptake: Cascade Exchangers, Transporters, InhibitorsKato, Takehiro; Lim, Bumhee; Cheng, Yangyang; Pham, Anh Tuan; ... Matile, Stefan
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Elongator stabilizes microtubules to control central spindle asymmetry and polarized trafficking of cell fate determinantsPlanelles-Herrero, Vicente Jose; Bittleston, Alice; Seum, Carole; Daeden, Alicia; ... Derivery, Emmanuel
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Epithelial cells adapt to curvature induction via transient active osmotic swellingTomba, Caterina; Luchnikov, Valeriy; Barberi, Luca; Blanch-Mercader, Carles; Roux, Aurélien
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HydroFlipper membrane tension probes: imaging membrane hydration and mechanical compression simultaneously in living cellsGarcia, José; Lopez Andarias, Javier; Maillard, Jimmy Stéphane; Mercier, Vincent; ... Matile, Stefan
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Integer topological defects organize stresses driving tissue morphogenesisGuillamat, Pau; Blanch Mercader, Carles; Pernollet, Guillaume Eric Arnaud; Kruse, Karsten; Roux, Aurélien
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Motor usage imprints microtubule stability along the shaftAndreu-Carbó, Mireia; Fernandes, Simon; Velluz, Marie-Claire; Kruse, Karsten; Aumeier, Charlotte
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Optochemical Control of Therapeutic Agents through Photocatalyzed IsomerizationWatson, Emma; Russo, Francesco; Moreau, Dimitri; Winssinger, Nicolas;
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Pressure and curvature control of the cell cycle in epithelia growing under spherical confinementDi Meglio, Ilaria Francesca; Trushko, Anastasiya; Guillamat, Pau; Blanch-Mercader, Carles; ... Roux, Aurélien
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Snf7 spirals sense and alter membrane curvatureJukic, Nebojsa; Perrino, Alma P.; Humbert, Frédéric Jean-Christian; Roux, Aurélien; Scheuring, Simon
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The cellular slime mold Fonticula alba forms a dynamic, multicellular collective while feeding on bacteriaToret, Christopher; Picco, Andrea; Boiero-Sanders, Micaela; Michelot, Alphee; Kaksonen, Marko
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The Dynamic Range of Acidity: Tracking Rules for the Unidirectional Penetration of Cellular CompartmentsAssies, Lea; Mercier, Vincent; Lopez Andarias, Javier; Roux, Aurélien; ... Matile, Stefan
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The effect of motor-induced shaft dynamics on microtubule stability and lengthSchaer, Joël; Andreu Carbo, Mireia; Kruse, Karsten; Aumeier, Charlotte;
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Two-color in vitro assay to visualize and quantify microtubule shaft dynamicsAndreu Carbo, Mireia; Fernandes Ribeiro Da Sil, Simao; Aumeier, Charlotte;
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Type 2 diabetes disrupts circadian orchestration of lipid metabolism and membrane fluidity in human pancreatic isletsPetrenko, Volodymyr; Sinturel, Flore; Loizides-Mangold, Ursula; Paz Montoya, Jonathan; ... Dibner, Charna

Doctoral Thesis

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Crosstalk between walking kinesin-1 and microtubule network organizationAndreu Carbo, Mireia;
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SARA endosome and Microtubule asymmetries in ZebrafishRichard, Clément-Alexis;
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Uncoupling the mechanics of membrane tension and cell volumeRoffay, Chloé;

2021

Scientific Articles

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A liquid +TIP-network drives microtubule dynamics through tubulin condensationMiesch, Julie; Wimbish, Robert; Velluz, Marie-Claire; Aumeier, Charlotte;
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An autoinhibitory clamp of actin assembly constrains and directs synaptic endocytosisDel Signore, Steven J; Kelley, Charlotte F; Messelaar, Emily M; Lemos, Tania; ... Rodal, Avital Adah
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Bending toward differentiationTomba, Caterina; Roux, Aurélien;
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Blood virosphere in febrile Tanzanian childrenCordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent
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Chemical-Biology-derived in vivo Sensors: Past, Present, and FutureLoewith, Robbie Joséph; Roux, Aurélien; Pertz, Olivier;
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Common principles of surface deformation in biologyRoux, Aurélien;
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Dithiolane quartets: thiol-mediated uptake enables cytosolic delivery in deep tissueMartinent, Rémi; Tawffik, Salman; Lopez Andarias, Javier; Moreau, Dimitri; ... Matile, Stefan
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Ether lipids, sphingolipids and toxic 1-deoxyceramides as hallmarks for lean and obese type 2 diabetic patientsHannich, Joerg Thomas; Loizides-Mangold, Ursula Elfriede; Sinturel, Flore; Harayama, Takeshi; ... Dibner, Charna
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Excitable actin dynamics and amoeboid cell migrationEcker, Nicolas; Kruse, Karsten;
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Flipper Probes for the CommunityAssies, Léa; Garcia, José; Piazzolla, Francesca; Sanchez, Samantha; ... Matile, Stefan
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Fluorescent Membrane Tension Probes for Early EndosomesPiazzolla, Francesca; Mercier, Vincent; Assies, Léa; Sakai, Naomi; ... Matile, Stefan
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Genetically Encoded Supramolecular Targeting of Fluorescent Membrane Tension Probes within Live Cells: Precisely Localized Controlled Release by External Chemical StimulationLopez Andarias, Javier; Strakova, Karolina; Martinent, Rémi; Jimenez Rojo, Noemi; ... Matile, Stefan
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Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)Klionsky, Daniel J.; Cardenal-Munoz, Elena; Soldati, Thierry;
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Inhibition of Thiol‐Mediated Uptake with Irreversible Covalent InhibitorsLim, Bumhee; Cheng, Yangyang; Kato, Takehiro; Pham, Anh Tuan; ... Matile, Stefan
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Inhibitors of thiol-mediated uptakeCheng, Yangyang; Pham, Anh Tuan; Kato, Takehiro; Lim, Bumhee; ... Matile, Stefan
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Integer topological defects of cell monolayers: Mechanics and flowsBlanch Mercader, Carles; Guillamat, Pau; Roux, Aurélien; Kruse, Karsten;
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Kinesin-1 activity recorded in living cells with a precipitating dyeAngerani, Simona; Lindberg, Eric; Klena, Nikolai; Bleck, Christopher K. E.; ... Winssinger, Nicolas
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La formation des vésicules intraluminales de l'endosome est contrôlée par la tension membranaireMercier, Vincent; Larios, Jorge; Molinard, Guillaume; Goujon, Antoine; ... Gruenberg, Jean
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Luciferase Controlled Protein InteractionsChang, Dalu; Feng, Suihan; Girik, Vladimir; Riezman, Howard; Winssinger, Nicolas
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Lysosomal retargeting of Myoferlin mitigates membrane stress to enable pancreatic cancer growthGupta, Suprit; Yano, Julian; Mercier, Vincent; Htwe, Htet Htwe; ... Perera, Rushika M.
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Mitochondrial membrane tension governs fissionMahecic, Dora; Carlini, Lina; Kleele, Tatjana; Colom Diego, Adai; ... Manley, Suliana
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Morphogen gradient scaling by recycling of intracellular DppRomanova Michailidi, Maria; Hadjivasiliou, Zena; Aguilar-Hidalgo, Daniel; Basagiannis, Dimitris; ... Gonzalez Gaitan, Marcos
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Passive coupling of membrane tension and cell volume during active response of cells to osmosisRoffay, Chloé; Molinard, Guillaume; Kim, Kyoohyun; Urbanska, Marta; ... Roux, Aurélien
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Principles of membrane remodeling by dynamic ESCRT-III polymersPfitzner, Anna-Katharina; Moser Von Filseck, Joachim; Roux, Aurélien;
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Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in SwitzerlandChen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; ... Stadler, Tanja
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Quantifying Material Properties of Cell Monolayers by Analyzing Integer Topological DefectsBlanch Mercader, Carles; Guillamat, Pau; Roux, Aurélien; Kruse, Karsten;
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Self-repair protects microtubules from destruction by molecular motorsTriclin, Sarah; Inoue, Daisuke; Gaillard, Jérémie; Htet, Zaw Min; ... Théry, Manuel
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Structural requirements for membrane binding of human guanylate-binding protein 1Sistemich, Linda; Dimitrov Stanchev, Lyubomir; Kutsch, Miriam; Roux, Aurélien; ... Herrmann, Christian
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Zn2+ Intoxication of Mycobacterium marinum during Dictyostelium discoideum Infection Is Counteracted by Induction of the Pathogen Zn2+ Exporter CtpCHanna, Nabil; Koliwer-Brandl, Hendrik; Lefrancois, Louise; Kalinina, Vera; ... Barisch, Caroline

Newspaper Articles

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Motor usage imprints microtubule stability in the shaftAndreu Carbo, Mireia; Fernandes Ribeiro Da Sil, Simon; Velluz, Marie-Claire; Kruse, Karsten; Aumeier, Charlotte

Book Chapters

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Novel Single-Cell and High-Throughput Microscopy Techniques to Monitor Dictyostelium discoideum–Mycobacterium marinum Infection DynamicsMottet, Manon; Bosmani, Cristina; Hanna, Nabil; Nitschke, Jahn; ... Soldati, Thierry

Preprints

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Disruption of vacuolin microdomains in the host Dictyostelium discoideum increases resistance to Mycobacterium marinum -induced membrane damage and infectionBosmani, Cristina; Perret, Angélique; Leuba, Florence; Gueho, Aurélie; ... Soldati, Thierry
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The Dictyostelium discoideum E3 ubiquitin ligase TrafE coordinates endolysosomal damage response and cell-autonomous immunity to Mycobacterium marinumRaykov, Lyudmil; Mottet, Manon; Nitschke, Jahn; Soldati, Thierry;

Doctoral Thesis

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Identification and Characterization of Dictyostelium discoideum Conserved Response Factors Involved in Pathogen Detection and Stress Signal TransductionRaykov, Lyudmil;
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The Role of Phase Separation in the Initiation of EndocytosisKozak, Mateusz;

2020

Scientific Articles

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AI842, AI843, AI844 and AI177 antibodies do not recognize a FLAG-tagged protein by immunofluorescence in D. discoideum cellsMottet, Manon; Soldati, Thierry;
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AI842, AI843, AI844 and AI177 antibodies do not recognize a FLAG-tagged protein expressed in D. discoideum by western blotLeuba, Florence; Soldati, Thierry;
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An ESCRT-III Polymerization Sequence Drives Membrane Deformation and FissionPfitzner, Anna-Katharina; Mercier, Vincent; Jiang, Xiuyun; Moser Von Filseck, Joachim; ... Roux, Aurélien
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Anisotropic ESCRT-III architecture governs helical membrane tube formationMoser Von Filseck, Joachim; Barberi, Luca; Talledge, Nathaniel; Johnson, Isabel E.; ... Roux, Aurélien
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Automated high-content imaging for cellular uptake, from the Schmuck cation to the latest cyclic oligochalcogenidesMartinent, Rémi; Lopez Andarias, Javier; Moreau, Dimitri; Cheng, Yangyang; ... Matile, Stefan
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BMP Signaling Gradient Scaling in the Zebrafish Pectoral FinMateus Domingos, Rita; Holtzer, Laurentius Henricus; Seum, Carole; Hadjivasiliou, Zena; ... Gonzalez Gaitan, Marcos
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Buckling of an Epithelium Growing under Spherical ConfinementTrushko, Anastasiya; Di Meglio, Ilaria Francesca; Merzouki, Fatma Aziza; Blanch Mercader, Carles; ... Roux, Aurélien
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Caprin‐1 Promotes Cellular Uptake of Nucleic Acids with Backbone and Sequence DiscriminationGalli, Valentina; Sadhu, Kalyan Kumar; Masi, Daniela; Saarbach, Jacques; ... Winssinger, Nicolas
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Cell-Penetrating Streptavidin: A General Tool for Bifunctional Delivery with Spatiotemporal Control, Mediated by Transport Systems Such as Adaptive Benzopolysulfane NetworksLopez Andarias, Javier; Saarbach, Jacques; Moreau, Dimitri; Cheng, Yangyang; ... Matile, Stefan
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Combined Omics Approach Identifies Gambogic Acid and Related Xanthones as Covalent Inhibitors of the Serine Palmitoyltransferase ComplexHoch, Dominic Gregor; Abegg, Daniel; Hannich, Joerg Thomas; Pechalrieu, Dany; ... Adibekian, Alexander
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Conidial Melanin of the Human-Pathogenic Fungus"Aspergillus fumigatus" Disrupts Cell Autonomous Defenses in AmoebaeFerling, Iuliia; Dunn, Joe Dan; Ferling, Alexander; Soldati, Thierry; Hillmann, Falk
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Conserved Functions of Ether Lipids and Sphingolipids in the Early Secretory PathwayJimenez Rojo, Noemi; Leonetti, Manuel D.; Zoni, Valeria; Colom Diego, Adai; ... Riezman, Howard
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Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patientsFontana, Pierre; Ibberson, Mark; Stevenson, Brian; Wigger, Leonore; ... Reny, Jean-Luc
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Coordinated Ras and Rac Activity Shapes Macropinocytic Cups and Enables Phagocytosis of Geometrically Diverse BacteriaBuckley, Catherine Mary; Pots, Henderikus; Gueho, Aurélie; Vines, James H.; ... King, Jason S.
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Deterministic actin waves as generators of cell polarization cuesStankevicins, Luiza; Ecker, Nicolas; Terriac, Emmanuel; Maiuri, Paolo; ... Lautenschläger, Franziska
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Endosomal membrane tension regulates ESCRT-III-dependent intra-lumenal vesicle formationMercier, Vincent; Larios, Jorge; Molinard, Guillaume; Goujon, Antoine; ... Roux, Aurélien
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First-order agent-based models of emergent behaviour of Dictyostelium discoideum and their inspiration for swarm roboticsParhizkar, Mohammad; Di Marzo Serugendo, Giovanna; Nitschke, Jahn; Hellequin, Louis; ... Soldati, Thierry
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Fluorescent Membrane Tension Probes for Super-Resolution Microscopy: Combining Mechanosensitive Cascade Switching with Dynamic-Covalent Ketone ChemistryGarcia, José; Maillard, Jimmy Stéphane; Fureraj, Ina; Strakova, Karolina; ... Matile, Stefan
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HaloFlippers: a General Tool for the Fluorescence Imaging of Precisely Localized Membrane Tension Changes in Living CellsStrakova, Karolina; Lopez Andarias, Javier; Jimenez Rojo, Noemi; Chambers, Joseph E.; ... Matile, Stefan
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High-speed atomic force microscopy highlights new molecular mechanism of daptomycin actionZuttion, Francesca; Colom Diego, Adai; Matile, Stefan; Farago, Denes; ... Casuso, Ignacio
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Identification of anti-mycobacterium and anti-legionella compounds with potential distinctive structural scaffolds from an HD-PBL using phenotypic screens in amoebae host modelsHanna, Nabil; Kicka, Sébastien; Chiriano, Gianpaolo; Harrison, Christopher; ... Soldati, Thierry
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Ligand Binding to the Collagen VI Receptor Triggers a Talin-to-RhoA Switch that Regulates Receptor EndocytosisBürgi, Jérôme; Abrami, Laurence; Castanon Ortega, Irinka; Abriata, Luciano Andres; ... van der Goot, Francoise Gisou
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Mapping Cell Membrane Organization and Dynamics Using Soft Nanoimprint LithographySansen, T.; Sanchez-Fuentes, D.; Rathar, R.; Colom Diego, Adai; ... Picas, L.
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Mycobacterium bovis uses the ESX-1 Type VII secretion system to escape predation by the soil-dwelling amoeba Dictyostelium discoideumButler, Rachel E; Smith, Alex A.; Mendum, Tom A.; Chandran, Aneesh; ... Stewart, Graham R
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Mycobacterium marinum produces distinct mycobactin and carboxymycobactin siderophores to promote growth in broth and phagocytesKnobloch, Paulina; Koliwer‐Brandl, Hendrik; Arnold, Fabian M.; Hanna, Nabil; ... Hilbi, Hubert
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Palmitate and oleate modify membrane fluidity and kinase activities of INS-1E β-cells alongside altered metabolism-secretion couplingOberhauser, Lucie; Granziera, Sabrina; Colom Diego, Adai; Goujon, Antoine; ... Maechler, Pierre
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Pharmacological disruption of the Notch transcription factor complexLehal, Rajwinder; Zaric, Jelena; Vigolo, Michele; Urech, Charlotte; ... Radtke, Freddy
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Second-order agent-based models of emergent behaviour of Dictyostelium discoideum and their inspiration for swarm roboticsParhizkar, Mohammad; Di Marzo Serugendo, Giovanna; Nitschke, Jahn; Hellequin, Louis; ... Soldati, Thierry
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Self-Assembled Arrays of Gold Nanorod-Decorated Dielectric Microspheres with a Magnetic Dipole Response in the Visible Range for Perfect Lensing and Cloaking ApplicationsGrillo, Rossella; Beutel, Dominik; Cataldi, Ugo; Rockstühl, Carsten; ... Jülicher, Frank
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Spontaneous formation of chaotic protrusions in a polymerizing active gel layerLevernier, Nicolas; Kruse, Karsten;
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The RB008 antibody does not recognize D. discoideum NoxA by western blotLeuba, Florence; Soldati, Thierry;
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Transcriptional Responses of Dictyostelium discoideum Exposed to Different Classes of BacteriaLamrabet, Otmane; Melotti, Astrid; Burdet, Frédéric; Hanna, Nabil; ... Cosson, Pierre
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Vacuolins and myosin VII are required for phagocytic uptake and phagosomal membrane recycling in Dictyostelium discoideumBosmani, Cristina; Leuba, Florence; Hanna, Nabil; Bach, Frauke; ... Soldati, Thierry
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Vesicular and non-vesicular lipid export from the ER to the secretory pathwayFunato, Kouichi; Riezman, Howard; Muñiz, Manuel;
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Virosaurus A Reference to Explore and Capture Virus Genetic DiversityGleizes, Anne; Laubscher, Florian; Guex, Nicolas; Iseli, Christian; ... Le Mercier, Philippe
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Wnt-controlled sphingolipids modulate Anthrax Toxin Receptor palmitoylation to regulate oriented mitosis in zebrafishCastanon Ortega, Irinka; Hannich, Joerg Thomas; Abrami, Laurence; Huber, F.; ... Gonzalez Gaitan, Marcos

Doctoral Thesis

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Erratic Cell Motility Generated By Deterministic Actin Polymerization WavesEcker, Nicolas;
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Implication of anticoagulant heparan sulfate as protection against tumor invasion and angiogenesis: study in endometrial adenocarcinoma grade 1Zouggari, Nawel;
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The role of mechanical forces in regulating cell proliferation in encapsulated epithelial tissuesDi Meglio, Ilaria Francesca;
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