Département de botanique et biologie végétale

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2021

Scientific Articles

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A constitutively monomeric UVR8 photoreceptor confers enhanced UV-B photomorphogenesisPodolec, Roman; Lau, Kelvin Ka Ching; Wagnon, Timothée; Hothorn, Michael; Ulm, Roman
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Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptationPaulišić, Sandi; Qin, Wenting; Arora Veraszto, Harshul; Then, Christiane; ... Martínez-García, Jaime F
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Blüten- und Bestäubungsvielfalt bei Sinningia (Gesneriaceae)Chautems, Alain Philippe; Perret, Mathieu; Weber, Anton;
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Global Analysis of the Zinc Homeostasis Network in Pseudomonas aeruginosa and Its Gene Expression DynamicsDucret, Verena; Abdou, Melina; Goncalves Milho, Catarina; Leoni, Sara; ... Perron, Karl
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Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasisRied, Martina; Wild, Rebekka; Zhu, Jinsheng; Pipercevic, Joka; ... Hothorn, Michael
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Isolation and identification of isocoumarin derivatives with specific inhibitory activity against wnt pathway and metabolome characterization of lasiodiplodia venezuelensisPellissier, Léonie; Koval, Alexey; Marcourt, Laurence; Ferreira Queiroz, Emerson; ... Wolfender, Jean-Luc
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Perception and Signaling of Ultraviolet-B Radiation in PlantsPodolec, Roman; Demarsy, Emilie; Ulm, Roman;
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Phylogenomics of Gesneriaceae using targeted capture of nuclear genesOgutcen, Ezgi; Christe, Camille; Nishii, Kanae; Salamin, Nicolas; ... Perret, Mathieu
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Phylogeographic reconstructions can be biased by ancestral shared alleles: The case of the polymorphic lichen Bryoria fuscescens in Europe and North AfricaGalan Boluda, Carlos; Rico, Víctor J.; Naciri, Yamama; Hawksworth, David L.; Scheidegger, Christoph
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Révision du genre Ammodaucus (Apiaceae) en Afrique du NordChatelain, Cyrille; Chambouleyron, Mathieu; Charrier, Matthieu; Léger, Jean-François; Perret, Mathieu
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Signatures of antagonistic pleiotropy in a bacterial flagellin epitopeParys, Katarzyna; Colaianni, Nicholas R.; Lee, Ho-Seok; Hohmann, Ulrich; ... Belkhadir, Youssef
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Three new species of Columnea (Gesneriaceae) from the western Andean slopes of Ecuador and ColombiaClark, John L.; Tobar, Francisco; Clavijo, Laura; Perret, Mathieu; Graham, Catherine Helen
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Using Biotinylated myo-Inositol Hexakisphosphate to Investigate Inositol Pyrophosphate–Protein Interactions with Surface-Based BiosensorsCouto, Daniel; Richter, Annika; Walter, Henriette; Furkert, David; ... Fiedler, Dorothea
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Usnea dasopoga (Ach.) Nyl. and U. barbata (L.) F. H. Wigg. (Ascomycetes, Parmeliaceae) are two different species: a plea for reliable identifications in molecular studiesClerc, Philippe; Naciri, Yamama;

Newspaper Articles

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GESNERIACEAE of Pichincha, Pichincha Province, EcuadorPerret, Mathieu; Clark, John L.; Graham, Susannah Catherine; Tobar, Francisco;

Book Chapters

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Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Genomic DNA from Mature Seed TissuesIwasaki, Mayumi; Lopez Molina, Luis;

Doctoral Thesis

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From perception to transcriptional regulation: an analysis of mutants affected in the UV-B signaling pathway in plantsPodolec, Roman;
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The mature endosperm governs early seedling development in Arabidopsis thaliana: a focus on seedling cuticle formationDe Giorgi, Julien;

2020

Scientific Articles

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A Minimal Genetic Passkey to Unlock Many Legume Doors to Root Nodulation by RhizobiaUnay, Jovelyn; Perret, Xavier;
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A two-way molecular dialogue between embryo and endosperm is required for seed developmentDoll, N M; Royek, S; Fujita, S; Okuda, Satohiro; ... Ingram, G
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Auxiliary domains of the HrpB bacterial DExH-box helicase shape its RNA preferencesHausmann, Stéphane; Geiser, Johan; Vadas, Oscar; Ducret, Verena; ... Valentini, Martina
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BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis rootsCrook, Ashley D; Willoughby, Andrew C; Hazak, Ora; Okuda, Satohiro; ... Nimchuk, Zachary L
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Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d'IvoireFossou, Romain; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier;
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Chemical Basis of Floral Color Signals in Gesneriaceae: The Effect of Alternative Anthocyanin PathwaysOgutcen, Ezgi; Durand, Karine; Wolowski, Marina; Clavijo, Laura; ... Perret, Mathieu
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Constitutive Activation of Leucine-Rich Repeat Receptor Kinase Signaling Pathways by BAK1-INTERACTING RECEPTOR-LIKE KINASE3 ChimeraHohmann, Ulrich; Ramakrishna, Priya; Wang, Kai; Lorenzo-Orts, Laura; ... Hothorn, Michael
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Cryptochrome-mediated blue-light signalling modulates UVR8 photoreceptor activity and contributes to UV-B tolerance in ArabidopsisTissot, Nicolas; Ulm, Roman;
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Degradation of the transcription factors PIF4 and PIF5 under UV-B promotes UVR8-mediated inhibition of hypocotyl growth in ArabidopsisTavridou, Eleni; Pireyre, Marie; Ulm, Roman;
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Embryonic Photosynthesis Affects Post-Germination Plant GrowthSela, Ayala; Piskurewicz, Urszula; Megies, Christian; Mène-Saffrané, Laurent; ... Lopez Molina, Luis
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Generation of stilbene antimicrobials against multiresistant strains of Staphylococcus aureus through biotransformation by the enzymatic secretome of Botrytis cinereaRighi, Davide; Huber, Robin; Koval, Alexey; Marcourt, Laurence; ... Ferreira Queiroz, Emerson
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Identification of BBX proteins as rate-limiting cofactors of HY5Bursch, Katharina; Toledo-Ortiz, Gabriela; Pireyre, Marie; Lohr, Miriam; ... Johansson, Henrik
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Identification of tannic cell walls at the outer surface of the endosperm upon Arabidopsis seed coat ruptureDemonsais, Lara; Utz-Pugin, Anne; Loubery, Sylvain Philippe; Lopez Molina, Luis;
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Methods for identifying green infrastructureHoneck, Erica Cristine; Sanguet, Arthur; Schlaepfer, Martin; Wyler, Nicolas; Lehmann, Anthony
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Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2Okuda, Satohiro; Fujita, Satoshi; Moretti, Andréa; Hohmann, Ulrich; ... Hothorn, Michael
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mTERF8, a Member of the Mitochondrial Transcription Termination Factor Family, Is Involved in the Transcription Termination of Chloroplast Gene psbJXiong, Hai-Bo; Wang, Jing; Huang, Chao; Rochaix, Jean-David; ... Yang, Zhong-Nan
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Pharmacological disruption of the Notch transcription factor complexLehal, Rajwinder; Zaric, Jelena; Vigolo, Michele; Urech, Charlotte; ... Radtke, Freddy
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The CzcCBA efflux system requires the CadA P-type ATPase for timely expression upon zinc excess in pseudomonas aeruginosaDucret, Verena; Gonzalez, Manuel R.; Leoni, Sara; Valentini, Martina; Perron, Karl
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The genetics of evolutionary radiationsNaciri, Yamama; Linder, H. Peter;
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UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in ArabidopsisTavridou, Eleni; Schmid-Siegert, Emanuel; Fankhauser, Christian; Ulm, Roman;
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WRKY33-PIF4 loop is required for the regulation of H2O2 homeostasisSun, Yijing; Liu, Zhixin; Guo, Jinggong; Zhu, Zhinan; ... Sun, Xuwu

2019

Scientific Articles

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dicranum scottianum Turner (Dicranaceae): synonyms, a type and the correct authorPrice, Michelle; Maier, Eva; Ellis, Leonard T.;
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A genetically validated approach to detect inorganic polyphosphates in plantsZhu, Jinsheng; Loubery, Sylvain Philippe; Broger, Larissa; Zhang, Youjun; ... Hothorn, Michael
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Chemo-diversification of plant extracts using a generic bromination reaction and monitoring by metabolite profilingRighi, Davide; Marcourt, Laurence; Koval, Alexey; Ducret, Verena; ... Ferreira Queiroz, Emerson
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Concerted expression of a cell cycle regulator and a metabolic enzyme from a bicistronic transcript in plantsLorenzo-Orts, Laura; Witthoeft, Janika; Deforges, Jules; Martinez Font, Jacobo; ... Hothorn, Michael
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Connecting data and expertise: a new alliance for biodiversity knowledgeHobern, Donald; Baptiste, Brigitte; Copas, Kyle; Guralnick, Robert; ... Wieczorek, John
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Crystal structure of the leucine-rich repeat ectodomain of the plant immune receptor kinase SOBIR1Hohmann, Ulrich; Hothorn, Michael;
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Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3: a total eclipseRobinson, Graham; Kaufmann, Markus; Roux, Céline; Martinez Font, Jacobo; ... Fitzpatrick, Thérésa Bridget
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Deletion of rRNA Operons of Sinorhizobium fredii Strain NGR234 and Impact on Symbiosis With LegumesCherni, Ala Eddine; Perret, Xavier;
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ICE1 and ZOU determine the depth of primary seed dormancy in Arabidopsis independently of their role in endosperm developmentMacGregor, Dana R; Zhang, Naichao; Iwasaki, Mayumi; Chen, Min; ... Penfield, Steven
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Identity and functions of inorganic and inositol polyphosphates in plantsLorenzo-Orts, Laura; Couto, Daniel; Hothorn, Michael;
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Loss of NifQ Leads to Accumulation of Porphyrins and Altered Metal-Homeostasis in Nitrogen-Fixing SymbiosesSaad, Maged; Michalet, Sophie; Fossou, Romain; Putnik‐Delić, Marina; ... Perret, Xavier
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Mechanistic insights into the evolution of DUF26-containing proteins in land plantsVaattovaara, Aleksia; Brandt, Benjamin; Rajaraman, Sitaram; Safronov, Omid; ... Wrzaczek, Michael
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Molecular characterization of CHAD domains as inorganic polyphosphate-binding modulesLorenzo-Orts, Laura; Hohmann, Ulrich; Zhu, Jinsheng; Hothorn, Michael;
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Non-canonical RNA-directed DNA methylation participates in maternal and environmental control of seed dormancyIwasaki, Mayumi; Hyvärinen, Lena; Piskurewicz, Urszula; Lopez Molina, Luis;
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Plant photoreceptors and their signaling components compete for COP1 binding via VP peptide motifsLau, Kelvin Ka Ching; Podolec, Roman; Chappuis, Richard; Ulm, Roman; Hothorn, Michael
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Polarized transport across root epitheliaRamakrishna, Priya; Barberon, Marie;
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Polyamine uptake transporter 2 (put2) and decaying seeds enhance phyA-mediated germination by overcoming PIF1 repression of germinationKim, Woohyun; Zeljković, Sanja Ćavar; Piskurewicz, Urszula; Megies, Christian; ... Lopez Molina, Luis
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Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe GeonomateaeLoiseau, Oriane; Olivares, Ingrid; Paris, Margot; de La Harpe, Marylaure; ... Salamin, Nicolas
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Three new species of Sinningia (Gesneriaceae) endemic to Espírito Santo, BrazilChautems, Alain Philippe; Dutra, Valquíria F.; Fontana, André P.; Peixoto, Mauro; ... Rossini, Josiene
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Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasisZhu, Jinsheng; Lau, Kelvin Ka Ching; Puschmann, Robert; Harmel, Robert K; ... Hothorn, Michael

Technical Reports

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National significance of natural history collections in Switzerland: archives and resources for modern scienceBeer, Christoph; Burckhardt, Daniel; Cibois, Alice; Gonseth, Yves; ... Tschudin, Pascal

Doctoral Thesis

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Biochemical and physiological studies on polyphosphate metabolism in plantsLorenzo-Orts, Laura;
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Étude du système symbiotique rhizobia-Cajanus cajan dans des champs cultivés en Côte d'IvoireFossou, Romain;
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Études écologiques et fonctionnelles de symbioses entre rhizobia et légumineusesCherni, Ala Eddine;
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Functional characterisation of rice put genes and biofortification of crops with enhanced levels of vitamin b1 and vitamin b6Fudge, Jared;
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Identification and characterization of chloroplast protein phosphatases involved in regulation of photosynthesis in Chlamydomonas reinhardtiiCariti, Federica;
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On the role of triphosphorylated thiamine compounds in Arabidopsis thalianaHofmann, Manuel;
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The role of embryonic photosynthesis in post-germination plant developmentSela, Ayala;
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Towards Synthesis of Minimal Plasmids for Symbiotic Nitrogen FixationUnay, Jovelyn;

2018

Scientific Articles

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A Maternally Deposited Endosperm Cuticle Contributes to the Physiological Defects of transparent testa SeedsLoubery, Sylvain Philippe; De Giorgi, Julien; Utz-Pugin, Anne; Demonsais, Lara; Lopez Molina, Luis
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Arabidopsis RUP2 represses UVR8-mediated flowering in noninductive photoperiodsArongaus, Adriana Beatriz; Chen, Song; Pireyre, Marie; Glöckner, Nina; ... Ulm, Roman
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Chloroplast Biogenesis Controlled by DELLA-TOC159 Interaction in Early Plant DevelopmentShanmugabalaji, Venkatasalam; Chahtane, Hicham; Accossato, Sonia; Rahire, Michèle; ... Kessler, Felix
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CLERK is a novel receptor kinase required for sensing of root-active CLE peptides in ArabidopsisAnne, Pauline; Amiguet-Vercher, Amelia; Brandt, Benjamin; Kalmbach, Lothar; ... Hardtke, Christian S.
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Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake CadagnoLudin, Samuel; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; ... Tonolla, Mauro Amedeo
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Consortium of European Taxonomic Facilities (CETAF) best practices in electronic publishing in taxonomyBénichou, Laurence; Gérard, Isabelle; Laureys, Éric; Price, Michelle;
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Control of plant phosphate homeostasis by inositol pyrophosphates and the SPX domainJung, Ji-Yul; Ried, Martina; Hothorn, Michael; Poirier, Yves;
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Coping with 'Dark Sides of the Sun' through Photoreceptor SignalingDemarsy, Emilie; Goldschmidt-Clermont, Michel P.; Ulm, Roman;
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Investigation of temperature conditions in Swiss urban and suburban microhabitats for the overwintering suitability of diapausing Aedes albopictus eggsRavasi, Damiana; Guidi, Valeria; Flacio, Eleonora; Lüthy, Peter; ... Tonolla, Mauro Amedeo
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MacroH2A histone variants limit chromatin plasticity through two distinct mechanismsKozlowski, Marek; Corujo, David; Hothorn, Michael; Guberovic, Iva; ... Ladurner, Andreas G
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Marine and freshwater micropearls: biomineralization producing strontium-rich amorphous calcium carbonate inclusions is widespread in the genus Tetraselmis (Chlorophyta)Martignier, Agathe; Filella, Montserrat; Pollok, Kilian; Melkonian, Michael; ... Ariztegui, Daniel
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Mechanistic basis for the activation of plant membrane receptor kinases by SERK-family coreceptorsHohmann, Ulrich; Santiago Cuellar, Julia; Nicolet, Joël; Olsson, Vilde; ... Hothorn, Michael
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Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1Zhang, Lin; Pu, Hua; Duan, Zhikun; Li, Yonghong; ... Peng, Lianwei
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Perception of Sunflecks by the UV-B Photoreceptor UV RESISTANCE LOCUS8Moriconi, Victoria; Binkert, Melanie; Costigliolo, Cecilia; Sellaro, Romina; ... Casal, Jorge J
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Photoreceptor-mediated regulation of the COP1/SPA E3 ubiquitin ligasePodolec, Roman; Ulm, Roman;
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Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease ComplexSchreier, Tina B; Cléry, Antoine; Schläfli, Michael; Galbier, Florian; ... Kötting, Oliver
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Pseudomonas aeruginosa zinc homeostasis: Key issues for an opportunistic pathogenGonzalez, Manuel; Ducret, Verena; Leoni, Sara; Perron, Karl;
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Singlet oxygen-triggered chloroplast-to-nucleus retrograde signalling pathways: an emerging perspectiveDogra, Vivek; Rochaix, Jean-David; Kim, Chanhong;
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The disentanglement of Andreaea alpina Hedw. (Andreaeaceae): Typifications and nomenclatural changesPrice, Michelle; Ellis, Leonard T.;
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The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolutionLang, Daniel; Ullrich, Kristian K; Murat, Florent; Fuchs, Jörg; ... Rensing, Stefan A
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The plant pathogen Pseudomonas aeruginosa triggers a DELLA-dependent seed germination arrest in ArabidopsisChahtane, Hicham; Fuller, Thanise; Allard, Pierre-Marie; Marcourt, Laurence; ... Lopez Molina, Luis
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The roles of dispersal and mass extinction in shaping palm diversity across the CaribbeanCano, Angela; Bacon, Christine D.; Stauffer, Fred Walter; Antonelli, Alexandre; ... Perret, Mathieu
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The SERK3 elongated allele defines a role for BIR ectodomains in brassinosteroid signallingHohmann, Ulrich; Nicolet, Joël; Moretti, Andréa; Hothorn, Ludwig A.; Hothorn, Michael
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Transcriptome Analysis of Pseudomonas aeruginosa Cultured in Human Burn Wound ExudatesGonzalez, Manuel; Ducret, Verena; Leoni, Sara; Fleuchot, Betty; ... Perron, Karl
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Two hundred years in the dark: A type for the moss Encalypta crispataPrice, Michelle;

Books

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International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) adopted by the Nineteenth International Botanical Congress Shenzhen, China, July 2017Turland, N.J.; Wiersema, J.H.; Barrie, F.R.; Greuter, W.; ... Smith, G.F.

Book Chapters

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Brassinosteroid Sensing and Signaling in PlantsHohmann, Ulrich; Hothorn, Michael;

Doctoral Thesis

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Flow cytometry as a tool to investigate the anoxygenic phototrophic sulfur bacteria coexistence in the chemocline of meromictic Lake CadagnoDanza, Francesco;
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Functional genomics of purple sulfur bacteria from Lake CadagnoLudin, Samuel; Tonolla, Mauro Amedeo;
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