Département de génétique et évolution

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2018

Scientific Articles

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A reply to Sahle and Braun's reply to ‘The pattern of emergence of a Middle Stone Age tradition at Gademotta and Kulkuletti (Ethiopia) through convergent tool and point technologies’ [J. Hum. Evol. 91 (2016) 93–121]Douze, Katja; Delagnes, Anne; Rots, Veerle; Gravina, Brad;
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Between continuity and discontinuity: An overview of the West African Paleolithic over the last 200,000 yearsChevrier, Benoît; Huysecom, Eric; Soriano, S.; Rasse, M.; ... Tribolo, C.
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Cryptic Biological Invasions: a General Model of HybridizationQuilodran, Claudio; Austerlitz, Frédéric; Currat, Mathias; Montoya Burgos, Juan Ignacio;
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Deciphering the fine nucleotide diversity of full HLA class I and class II genes in a well-documented population from sub-Saharan AfricaGoeury, Thomas; Creary, L E; Brunet, Lydie; Galan, M; ... Sanchez-Mazas, Alicia
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Genetic history of the African Sahelian populationsČerný, V; Kulichová, I; Poloni, Estella S.; Nunes, Jose Manuel; ... Sanchez-Mazas, Alicia
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Impact of cycling cells and cell cycle regulation on Hydra regenerationBuzgariu, Wanda Christa; Wenger, Yvan; Tcaciuc, Nina; Catunda Lemos, Ana Paula; Galliot, Brigitte
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Mandenka from Senegal: Next Generation Sequencing typings reveal very high frequencies of particular HLA class II alleles and haplotypesGoeury, Thomas; Creary, L E; Fernandez-Vina, M A; Tiercy, Jean-Marie; ... Sanchez-Mazas, Alicia
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Range expansion as an explanation for introgression in European wildcatsNussberger, B.; Currat, Mathias; Quilodran, Claudio; Ponta, N.; Keller, L.F.

Books

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Un siècle de recherches archéologiques en Côte d’Ivoire : bilan et perspectivesKienon-Kaboré, Timpoko Hélène; Loukou, Yao Serge Bonaventure; Huysecom, Eric;

Book Chapters

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Hydra, a model system for deciphering the mechanisms of aging and resistance to agingSchenkelaars, Quentin; Tomczyk, Szymon; Wenger, Yvan; Ekundayo, Kazadi; ... Galliot, Brigitte

Doctoral Thesis

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MetaPIGA 4: an evolutionary computation approach for estimating phylogenetic treesGrbic, Dorde;
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Quantitative and mechanistic characterization of geometric features and patterns in biological systemsPires Nunes Martins, Antonio Filipe;

2017

Scientific Articles

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Ancestry and demography and descendants of Iron Age nomads of the Eurasian SteppeUnterländer, Martina; Palstra, Friso; Lazaridis, Iosif; Pilipenko, Aleksandr; ... Burger, Joachim
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Chronologie du Paléolithique ouest africain : premières datations OSL de la Vallée de la Falémé (Sénégal)Lebrun, Brice; Tribolo, Chantal; Chevrier, Benoît; Lespez, Laurent; ... Huysecom, Eric
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Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for ImmunogeneticsSanchez-Mazas, Alicia; Nunes, Jose Manuel; Middleton, D; Sauter, J; ... Fleischhauer, K
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Context- and Output Layer-Dependent Long-Term Ensemble Plasticity in a Sensory CircuitYamada, Yoshiyuki; Bhaukaurally, Khaleel; Madarasz, Tamas; Pouget, Alexandre; ... Carleton, Alan
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Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference databaseVivien, Régis Lionel; Holzmann, Maria; Werner, Inge; Pawlowski, Jan Wojciech; ... Ferrari, Benoît
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Ethno-archaeometry in eastern Senegal: The connections between raw materials and finished ceramic productsCantin, N.; Mayor, Anne;
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Evolution of immune chemoreceptors into sensors of the outside worldDietschi, Quentin; Tuberosa, Joël; Roesingh, Lone Neelchen; Loichot, Gregory; ... Rodriguez, Ivan
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Investigating population continuity with ancient DNA under a spatially explicit simulation frameworkSilva, Nuno; Rio, Jérémy Marc Xavier; Currat, Mathias;
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The "Enhancement" of Cultural Heritage by AMS Dating: Ethical Questions and Practical ProposalsHuysecom, Eric; Hajdas, Irka; Renold, Marc-André Jean; Synal, Hans-Arno; Mayor, Anne
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The historical spread of Arabian Pastoralists to the eastern African Sahel evidenced by the lactase persistence -13,915*G allele and mitochondrial DNAPriehodová, Edita; Austerlitz, Frédéric; Čížková, Martina; Mokhtar, Mohammed G; ... Černý, Viktor
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The HLA-A, -B and -DRB1 polymorphism in a large dataset of South Brazil bone marrow donors from Rio Grande do SulBoquett, J A; Nunes, Jose Manuel; Buhler, Stéphane; de Oliveira, M Z; ... Sanchez-Mazas, Alicia
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The HLA-B landscape of Africa: Signatures of pathogen-driven selection and molecular identification of candidate alleles to malaria protectionSanchez-Mazas, Alicia; Černý, Viktor; Di, Da; Buhler, Stéphane; ... Nunes, Jose Manuel
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The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methodsMartiniano, Rui; Cassidy, Lara M.; Ó'Maoldúin, Ros; McLaughlin, Russell; ... Bradley, Daniel G.
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Trends in tissue repair and regenerationGalliot, Brigitte; Crescenzi, Marco; Jacinto, Antonio; Tajbakhsh, Shahragim;

Preprints

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Deficient autophagy drives aging in HydraTomczyk, Szymon; Schenkelaars, Quentin; Suknovic, Nenad; Wenger, Yvan; ... Galliot, Brigitte

Professional Articles

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Approches archéologiques et historiques des fortifications précoloniales à l’Ouest-Cameroun et au Sénégal orientalAymeric Nsangou, Jacques De Limbepe;

Book Chapters

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Cataloguing findsOzainne, Sylvain;
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Ceramic technology between past and present : a study of Malian traditionsMayor, Anne;
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Chronology of Human Occupation During the Holocene in West Africa: The Dogon Country Radiocarbon RecordOzainne, Sylvain; Mayor, Anne; Huysecom, Eric;
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La technologie céramique entre présent et passé : le cas des traditions du MaliMayor, Anne;
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Le catalogue des trouvaillesOzainne, Sylvain;
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Milieux et techniques dans la Falémé (Sénégal oriental) et sondages au royaume d’Issiny (Côte d’Ivoire) : résultats de la 19ème année du programme « Peuplement humain et paléoenvironnement en Afrique »Huysecom, Eric; Mayor, Anne; Lorenzo Martinez, Maria; Aymeric Nsangou, Jacques De Limbepe; ... Vieugue, Julien

Proceedings Chapters

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Le Bronze moyen et récent en Italie du Nord, Allemagne du Sud et Suisse et corrélation des systèmes chrono-culturelsDavid, Wolfgang; David-Elbiali, Mireille; De Marinis, Raffaele Carlo; Rapi, Marta;

Doctoral Thesis

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Cellular architecture & rab protein distribution in Drosophila melanogaster male accessory glandsPrince, Elodie;
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Diversity of Foraminifera and applications of protist metabarcoding in bioindication: focus on freshwater environmentApotheloz-Perret-Gentil, Laure;
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Epithelial autophagy and longevity of Hydra oligactis, a new model for aging researchTomczyk, Szymon;
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Investigation of the Neolithic transition in Europe through spatially explicit simulations applied to ancient DNAMonteiro Da Silva, Nuno Miguel;
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Mesenchymal stromal cell interactions with pancreatic islets and liver cells modulate viability and functionalityMontanari, Elisa;
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Phylogeny of denticulate catfish (Loricarioidei: Siluriformes) and their use as a new model to understand the evolution and development of dental tissue in new areas of the vertebrate bodyRivera Rivera, Carlos Javier;

2016

Scientific Articles

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A Study of Aβ Oligomers in the Temporal Cortex and Cerebellum of Patients with Neuropathologically Confirmed Alzheimer's Disease Compared to Aged ControlsSavioz, Armand; Giannakopoulos, Panteleimon; Herrmann, François; Klein, William L.; ... Giacobini, Ezio
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Alteration of Nrp1 signaling at different stages of olfactory neuron maturation promotes glomerular shifts along distinct axes in the olfactory bulbAssens, Alexis; Dal Col, Julien; Njoku, Anthony; Dietschi, Quentin; ... Rodriguez, Ivan
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An interdigit signalling centre instructs coordinate phalanx-joint formation governed by 5′Hoxd–Gli3 antagonismHuang, Bau-Lin; Trofka, Anna; Furusawa, Aki; Norrie, Jacqueline L.; ... Mackem, Susan
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Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated InfectionCordey, Samuel; Vu Cantero, Diem-Lan; Schibler, Manuel; L'Huillier, Arnaud; ... Kaiser, Laurent
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Comprehensive view of the population history of Arabia as inferred by mtDNA variationČerný, Viktor; Čížková, Martina; Poloni, Estella S.; Al-Meeri, Ali; Mulligan, Connie J
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Dense encoding of natural odorants by ensembles of sparsely activated neurons in the olfactory bulbGschwend, Olivier; Beroud, Jonathan; Vincis, Roberto; Rodriguez, Ivan; Carleton, Alan
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Diet, health, mobility, and funerary practices in pre-colonial West Africa : a new bio-archaeological project in the Dogon CountryMayor, Anne; Dlamini-Stoll, Nonhlanhla; Hajdas, Irka;
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Disruption of Kcc2-dependent inhibition of olfactory bulb output neurons suggests its importance in odour discriminationGödde, Kathrin; Gschwend, Olivier; Puchkov, Dmytro; Pfeffer, Carsten; ... Jentsch, Thomas
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DNA barcoding of formalin-fixed aquatic oligochaetes for biomonitoringVivien, Régis Lionel; Ferrari, Benoît; Pawlowski, Jan Wojciech;
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Early farmers from across Europe directly descended from Neolithic AegeansHofmanová, Zuzana; Kreutzer, Susanne; Hellenthal, Garrett; Sell, Christian; ... Burger, Joachim
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Early Neolithic genomes from the eastern Fertile CrescentBroushaki, F.; Thomas, M. G.; Link, V.; Lopez, S.; ... Burger, J.
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Establishing a West African chrono-cultural framework: First luminescence dating of sedimentary formations from the Falémé Valley, Eastern SenegalLebrun, Brice; Tribolo, Chantal; Chevrier, Benoît; Rasse, Michel; ... Huysecom, Eric
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Familial and idiopathic Alzheimer are not the same diseaseSavioz, Armand;
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HLA class I molecular variation and peptide-binding properties suggest a model of joint divergent asymmetric selectionBuhler, Stéphane; Nunes, Jose Manuel; Sanchez-Mazas, Alicia;
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How somatic adult tissues develop organizer activityVogg, Matthias Christian; Wenger, Yvan; Galliot, Brigitte;
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Identification of the novel HLA-B*07:261 alleleBrunet, Lydie; Mouron, Delphine; Villard, Jean; Tiercy, Jean-Marie; Buhler, Stéphane
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KIR genotypic diversity in Portuguese and analysis of KIR gene allocation after allogeneic hematopoietic stem cell transplantationLigeiro, D.; Buhler, Stéphane; Abecasis, M.; Abade, O.; ... Trindade, H.
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Long distance dispersal shaped patterns of human genetic diversity in EurasiaAlves, Isabel; Arenas, Miguel; Currat, Mathias; Hanulova, Anna Sramkova; ... Excoffier, Laurent Georges Louis
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Loss of neurogenesis in Hydra leads to compensatory regulation of neurogenic and neurotransmission genes in epithelial cellsWenger, Yvan; Buzgariu, Wanda Christa; Galliot, Brigitte;
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Mapping the HLA diversity of the Iberian PeninsulaRomòn, Iñigo; Montes, Carmen; Ligeiro, Dario; Trindade, Hélder; ... Buhler, Stéphane
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New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approachZufferey Bakos, Anne; Ibberson, Mark; Reny, Jean-Luc; Nolli, Severine; ... Fontana, Pierre
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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental CommunitiesVivien, Régis Lionel; Lejzerowicz, Franck; Pawlowski, Jan Wojciech;
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The Vitamin A Derivative All-Trans Retinoic Acid Repairs Amyloid-β-Induced Double-Strand Breaks in Neural Cells and in the Murine NeocortexGruz-Gibelli Da Mouta, Emmanuelle; Chessel, Natacha; Allioux, Clélia; Marin, Pascale; ... Savioz, Armand
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West African Palaeolithic history: New archaeological and chronostratigraphic data from the Falémé valley, eastern SenegalChevrier, Benoît; Rasse, Michel; Lespez, Laurent; Tribolo, Chantal; ... Huysecom, Eric

Newspaper Articles

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Prise de position sur les Area StudiesKünzler, D.; Mayor, Anne; Kradolfer, S.; Herzog, Th.;
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Tracking Humans in Pre-colonial West Africa : a bio-archaeological study in the Dogon Country (Mali)Mayor, Anne; Dlamini-Stoll, Nonhlanhla; Hajdas, Irka;

Book Chapters

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"Toloy", "Tellem", "Dogon" : une réévaluation de l'histoire du peuplement en Pays dogon (Mali)Mayor, Anne; Huysecom, Eric;
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Cultural pathways to development among communitiesMayor, Anne; Huysecom, Eric;
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Transitions et continuités dans la vallée de la Falémé (Sénégal) : résultats de la 18ème année de recherche du programme international «Peuplement humain et paléoenvironnement en Afrique»Huysecom, Eric; Chevrier, Benoît; Mayor, Anne; Pelmoine, Thomas; ... Tribolo, Chantal

Doctoral Thesis

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Biodiversity loss by interspecific hybridization and Invasive SpeciesQuilodran, Claudio;
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Differentiation dynamics, postnatal fate and plasticity potential of murine embryonic pancreatic endocrine cellsBaronnier Caffe, Delphine;
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Divergence in Hox gene regulation and the evolution of a snake-like body planGuerreiro, Isabel;
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Evolution du Complexe Majeur d'Histocompatibilité et des Arylamines N-acétyltransférases: diversité génétique chez les chimpanzés et comparaison avec les humainsVangenot, Christelle;
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Evolutionary Developmental Genetics of amniote skin appendage orphology and coloration with special emphasis on squamate reptilesMontandon, Sophie Anne;
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Functional and structural neuroimaging in Parkinson’s disease and assessment of the therapeutic potential of Autologous Neural Cells Ecosystem (ANCE) transplantation in a MPTP nonhuman primate model: a multidisciplinary studyBadoud, Simon;
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Large-scale transcriptional profiling of chemosensory neurons identifies receptor-ligand pairs in vivoVon Der Weid, Benoît;
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Statistical analyses and numerical simulations of skin patterning processesManukyan, Liana;
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Study of the circadian rhythm in healthy volunteers, obese and type 2 diabetic patientsMakhlouf, Anne-Marie;
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Virtual anthropology : the forensic approachUldin, Tanya;
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Vomeronasal Formyl Peptide Receptors in mammalsDietschi, Quentin;

2015

Scientific Articles

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A dynamic architecture of lifeRubin, Beatrix P.; Brockes, Jeremy; Galliot, Brigitte; Grossniklaus, Ueli; ... Steger, Angelika
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Computer simulation of human leukocyte antigen genes supports two main routes of colonization by human populations in East AsiaDi, Da; Sanchez-Mazas, Alicia; Currat, Mathias;
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Correction to: "Forward-in-Time, Spatially Explicit Modeling Software to Simulate Genetic Lineages Under Selection"Currat, Mathias; Gerbault, Pascale; Di, Da; Nunes, Jose Manuel; Sanchez-Mazas, Alicia
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Defining a chronological framework for the Middle Stone Age in West Africa: Comparison of methods and models for OSL ages at Ounjougou (Mali)Tribolo, C.; Rasse, M.; Soriano, S.; Huysecom, Eric;
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Forward-in-Time, Spatially Explicit Modeling Software to Simulate Genetic Lineages Under SelectionCurrat, Mathias; Gerbault, Pascale; Di, Da; Nunes, Jose Manuel; Sanchez-Mazas, Alicia
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HLA genetic diversity in Hungarians and Hungarian Gypsies: complementary differentiation patterns and demographic signals revealed by HLA-A, -B and -DRB1 in Central EuropeInotai, D.; Szilvasi, A.; Benko, S.; Boros-Major, A.; ... Tordai, A.
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HLA supertype variation across populations: new insights into the role of natural selection in the evolution of HLA-A and HLA-B polymorphismsDos Santos Francisco, Rodrigo; Buhler, Stéphane; Nunes, Jose Manuel; Bitarello, Bárbara Domingues; ... Sanchez-Mazas, Alicia
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HLA-A, B and DRB1 genetic heterogeneity in QuebecBuhler, Stéphane; Nunes, Jose Manuel; Sanchez-Mazas, Alicia; Richard, L.;
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HLA-A-B-C-DRB1-DQB1 phased haplotypes in 124 Nigerian families indicate extreme HLA diversity and low linkage disequilibrium in Central-West AfricaTesti, M; Battarra, M; Lucarelli, G; Isgro, A; ... Sanchez-Mazas, Alicia
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Hydra, a powerful model for aging studiesTomczyk, Szymon; Fischer, Kathleen; Austad, Steven; Galliot, Brigitte;
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Individual Severity of AD-Type Lesions, Aß Oligomers, and Comorbidity in the Brain AgingBouras, Constantin; Kovari, Eniko Veronika; Savioz, Armand; Giacobini, Ezio; Xekardaki, Aikaterini
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L'incision généralisée de la vallée du Yamé (Mali) entre 2350 et 1700 ans cal. BP : quelle signification paléoenvironnementale et archéologique ?Garnier, Aline; Lespez, Laurent; Ozainne, Sylvain; Ballouche, Aziz; ... Huysecom, Eric
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Large-scale transcriptional profiling of chemosensory neurons identifies receptor-ligand pairs in vivoVon Der Weid, Benoît; Rossier, Daniel; Lindup, Matti; Tuberosa, Joël; ... Rodriguez, Ivan
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Modelling interspecific hybridization with genome exclusion to identify conservation actions: the case of native and invasive Pelophylax waterfrogsQuilodran, Claudio; Montoya Burgos, Juan Ignacio; Currat, Mathias;
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Molecular Barcoding of Aquatic Oligochaetes: Implications for BiomonitoringVivien, Régis Lionel; Wyler, Sofia; Lafont, Michel; Pawlowski, Jan Wojciech;
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Multi-functionality and plasticity characterize epithelial cells in HydraBuzgariu, Wanda Christa; Al Haddad, Sarah; Tomczyk, Szymon; Wenger, Yvan; Galliot, Brigitte
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Neuronal pattern separation in the olfactory bulb improves odor discrimination learningGschwend, Olivier; Abraham, Nixon; Lagier, Samuel; Begnaud, Frédéric; ... Carleton, Alan
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Photonic crystals cause active colour change in chameleonsTeyssier, Jérémie; Saenko, Suzanne V.; Van Der Marel, Dirk; Milinkovitch, Michel C.;
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R2OBBIE-3D, a Fast Robotic High-Resolution System for Quantitative Phenotyping of Surface Geometry and Colour-TextureMartins, António F.; Bessant, Michel; Manukyan, Liana; Milinkovitch, Michel C.;
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