Département de génétique et évolution

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2020

Scientific Articles

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Combining BrdU-Labeling to Detection of Neuronal Markers to Monitor Adult Neurogenesis in HydraBuzgariu, Wanda Christa; Curchod, Marie-Laure; Perruchoud, Chrystelle; Galliot, Brigitte;
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Deficient autophagy in epithelial stem cells drives aging in the freshwater cnidarian HydraTomczyk, Szymon; Suknovic, Nenad Slavko; Schenkelaars, Quentin; Wenger, Yvan; ... Galliot, Brigitte
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High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakesVivien, Régis Lionel; Apotheloz-Perret-Gentil, Laure; Pawlowski, Jan Wojciech; Werner, Inge; ... Ferrari, Benoit J. D.
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Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondiiKuby, Madlaina; Hammoudi, Pierre-Mehdi; Dogga, Sunil Kumar; Pages, Stéphane; ... Soldati-Favre, Dominique
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Neuroprotection Against Amyloid-b Induced DNA Double-Strand Breaks is Mediated by Multiple Retinoic Acid-Dependent PathwaysColas, Julien; Chessel, Natacha; Ouared, Ahmed Allaeddine; Gruz-Gibelli Da Mouta, Emmanuelle; ... Savioz, Armand
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Projecting introgression from domestic cats into European wildcats in the Swiss JuraQuilodrán, Claudio S.; Nussberger, Beatrice; Macdonald, David W.; Montoya Burgos, Juan Ignacio; Currat, Mathias
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Translucent in air and iridescent in water: structural analysis of a salamander egg sacZabuga, Aleksandra; Arrigo, Marcelle; Teyssier, Jérémie; Mouchet, Sébastien R.; ... Milinkovitch, Michel C.
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Variability of Early Iron Production in the Falémé Valley Region, Eastern SenegalWalmsley, Alexander Pardee; Serneels, Vincent; Hajdas, Irka; Mayor, Anne;
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Vernacular architecture in eastern Senegal: Chaînes opératoires and technical choicesPelmoine, Thomas; Mayor, Anne;

Newspaper Articles

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The polymorphism of Hydra microsatellite sequences provides strain-specific signaturesSchenkelaars, Quentin; Perez Cortes, Diego; Perruchoud, Chrystelle; Galliot, Brigitte;

Doctoral Thesis

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Molecular bases of pathogen avoidance behaviors and parasitic host manipulationKuby, Madlaina;
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The peripheral olfactory system: from wiring to signal adaptationAssens, Alexis;

2019

Scientific Articles

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A Phoenician glass eye bead from 7th–5th c. cal BCE Nin-Bèrè 3, Mali: Compositional characterisation by LA–ICP–MSTruffa Giachet, Miriam; Gratuze, Bernard; Ozainne, Sylvain; Mayor, Anne; Huysecom, Eric
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An evolutionarily-conserved Wnt3/β-catenin/Sp5 feedback loop restricts head organizer activity in HydraVogg, Matthias Christian; Beccari, Léonardo; Iglesias Olle, Laura; Rampon, Christine; ... Galliot, Brigitte
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Comparative analysis of Middle Stone Age artifacts in Africa (CoMSAfrica)Will, Manuel; Tryon, Christian; Shaw, Matthew; Scerri, Eleanor M. L.; ... Brooks, Alison S.
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Comparative genomics groups phages of negativicutes and classical firmicutes despite different gram-staining propertiesRands, Christopher; Brüssow, Harald; Zdobnov, Evgeny;
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Conference Report on Session 85 "Tracking the Neolithization Processes on Both Sides of the Sinai: a Bridge Between the Near East and North-Eastern Africa"Bocquentin, Fanny; Kapustka, Katarina; Vieugue, Julien; Huysecom, Eric;
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Diet variability among pre‐Dogon and early Dogon populations (Mali) from stable isotopes and dental diseasesDlamini-Stoll, Nonhlanhla; Sealy, Judith; Mayor, Anne;
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Diversification, Intensification and Specialization: Changing Land Use in Western Africa from 1800 BC to AD 1500Kay, Andrea U.; Fuller, Dorian Q.; Neumann, Katharina; Eichhorn, Barbara; ... Kaplan, Jed O.
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Hafting of Middle Paleolithic tools in Latium (central Italy): New data from Fossellone and Sant’Agostino cavesDegano, Ilaria; Soriano, Sylvain; Villa, Paola; Pollarolo, Luca; ... Tozzi, Carlo
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High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantationBuhler, Stéphane; Baldomero, Helen; Ferrari-Lacraz, Sylvie; Nunes, Jose Manuel; ... Villard, Jean
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Humans and Chimpanzees Display Opposite Patterns of Diversity in Arylamine N-Acetyltransferase GenesVangenot, Christelle; Gagneux, Pascal; de Groot, Natasja G.; Baumeyer, Adrian; ... Poloni, Estella S.
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Hybridization and introgression during density-dependent range expansion: European wildcats as a case studyQuilodran, Claudio; Nussberger, Beatrice; Montoya Burgos, Juan Ignacio; Currat, Mathias;
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Loss of neurogenesis in aging HydraTomczyk, Szymon; Buzgariu, Wanda Christa; Perruchoud, Chrystelle; Fisher, Kathleen; ... Galliot, Brigitte
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Model systems for regeneration: HydraVogg, Matthias Christian; Galliot, Brigitte; Tsiairis, Charisios D;
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Modern genomic tools reveal the structural and cellular diversity of cnidarian nervous systemsRentzsch, Fabian; Juliano, Celina; Galliot, Brigitte;
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Nouveaux ajouts à la liste des Lépidoptères du canton de GenèveAndriollo, Tommy; Landry, Bernard; Guibert, Bastien; Pastore, Maxime; Baumgart, Pierre
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Population history and genetic adaptation of the Fulani nomads: inferences from genome-wide data and the lactase persistence traitVicente, Mário; Priehodová, Edita; Diallo, Issa; Podgorná, Eliška; ... Schlebusch, Carina M.
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Problèmes d’archéologie développementale en AfriqueAymeric Nsangou, Jacques De Limbepe;
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Radiocarbon dating and the protection of cultural heritageHajdas, Irka; Jull, A J Timothy; Huysecom, Eric; Mayor, Anne; ... Sava, Tiberiu
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SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersalCurrat, Mathias; Arenas, Miguel; Quilodran, Claudio; Excoffier, Laurent; Ray, Nicolas
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Testing different (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sedimentsVivien, Régis Lionel; Apotheloz-Perret-Gentil, Laure; Pawlowski, Jan Wojciech; Werner, Inge; Ferrari, Benoit J.D.
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The menu varies with metabarcoding practices: a case study with the bat Plecotus auritusAndriollo, Tommy; Gillet, François; Michaux, Johan R.; Rüedi, Manuel;
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Vps11 and Vps18 of Vps-C membrane traffic complexes are E3 ubiquitin ligases and fine-tune signallingSegala, Grégory; Bennesch, Marcela; Mohammadi Ghahhari, Nastaran; Pandey, Deo Prakash; ... Picard, Didier

Preprints

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Generic and context-dependent gene modulations during Hydra whole body regenerationWenger, Yvan; Buzgariu, Wanda Christa; Perruchoud, Chrystelle; Loichot, Gregory; Galliot, Brigitte

Professional Articles

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Recommandations d’un collectif franco-suisse d’experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l’étude des communautés benthiquesApotheloz-Perret-Gentil, Laure; Lods-Crozet, Brigitte; Loizeau, Jean-Luc; Santiago, Sergio; Slaveykova, Vera

Edited Books

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Afrique 300'000 ans de diversité humaine: catalogue de l'exposition, Muséum d'Histoire Naturelle et Université de GenèveSanchez-Mazas, Alicia; Mayor, Anne; Poloni, Estella S.; Douze, Katja; ... Hubert Van Blyenburgh, Ninian

Book Chapters

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Archéologie et environnements au Sénégal oriental : résultats de la 21ème année du programme international "Peuplement humain et paléoenvironnement en Afrique"Mayor, Anne; Douze, Katja; Aymeric Nsangou, Jacques De Limbepe; Bocoum, Hamady; ... Huysecom, Eric
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Freshwater Cnidarian Hydra: A Long-lived Model for Aging StudiesSchenkelaars, Quentin; Boukerch Akrour, Salima; Galliot, Brigitte;

Doctoral Thesis

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Circadian Rhythms in Drosophila: From the Core Clock to Complex BehaviorsMachado Almeida, Pedro;
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Défendre sa communauté pendant l’ère atlantique : étude des fortifications endogènes dans la vallée de la Falémé (Sénégal oriental)Aymeric Nsangou, Jacques De Limbepe;
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Dissecting the rewarding and motivational nature of social interaction: a role of ventral tegmental area dopaminergic activityPrevost-Solie, Clément;
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ELAV mediates the repression of abd-A by transcriptional interference in the embryonic CNS of DrosophilaCastro Alvarez, Javier José;
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Étude archéométrique des perles en verre d’Afrique de l’Ouest: vers une meilleure compréhension des dynamiques techniques et commerciales à l’époque des empires précoloniauxTruffa Giachet, Miriam;
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Historical factors, environmental heterogeneity and genomic changes as drivers of fish diversification in the NeotropicsJardim De Queiroz, Luiz;
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Hydra, a model for studying the role of injury-induced ROS signalling during regeneration and monitoring the autophagy flux in live animalsSuknovic, Nenad Slavko;
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mathematical modelling and numerical simulations of growth-induced pattern formation in morphogenesisFofonjka, Anamarija;
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Mechano-chemical patterning of the skin: a mathematical and statistical perspectiveDe Oliveira Vilaca, Luis Miguel;
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Multi-layered regulation of Drosophila circadian behavior by molecular and neuronal factorsKozlov, Anatolii;
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SIRT1 in SF1 neurons links light inputs to circadian function in skeletal muscleAras, Ebru;
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Translational control of the iab-8 “lncRNA”: a CNS-Specific transcript from the Bithorax complex involved in fly sexual behaviorsFrei, Yohan;
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Uncovering the genetic basis of color pattern phenotypes and scale development in squamates through genomic and transcriptomic approachesUllate Agote, Asier;

2018

Scientific Articles

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A reply to Sahle and Braun's reply to ‘The pattern of emergence of a Middle Stone Age tradition at Gademotta and Kulkuletti (Ethiopia) through convergent tool and point technologies’ [J. Hum. Evol. 91 (2016) 93–121]Douze, Katja; Delagnes, Anne; Rots, Veerle; Gravina, Brad;
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An abstract drawing from the 73,000-year-old levels at Blombos Cave, South AfricaHenshilwood, Christopher S.; d’Errico, Francesco; van Niekerk, Karen L.; Dayet, Laure; ... Pollarolo, Luca
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Back to the roots: Reducing evolutionary rate heterogeneity among sequences gives support for the early morphological hypothesis of the root of Siluriformes (Teleostei: Ostariophysi)Rivera Rivera, Carlos Javier; Montoya Burgos, Juan Ignacio;
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Bayesian estimation of partial population continuity using ancient DNA and spatially explicit simulationsMonteiro Da Silva, Nuno Miguel; Rio, Jérémy Marc Xavier; Kreutzer, Susanne; Papageorgopoulou, Christina; Currat, Mathias
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Between continuity and discontinuity: An overview of the West African Paleolithic over the last 200,000 yearsChevrier, Benoît; Huysecom, Eric; Soriano, S.; Rasse, M.; ... Tribolo, C.
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Consequences of diverse evolutionary processes on american genetic gradients of modern humansBranco, Catarina; Velasco, Miguel; Benguigui, Macarena; Currat, Mathias; ... Arenas, Miguel
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Cryptic Biological Invasions: a General Model of HybridizationQuilodran, Claudio; Austerlitz, Frédéric; Currat, Mathias; Montoya Burgos, Juan Ignacio;
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Deciphering the fine nucleotide diversity of full HLA class I and class II genes in a well-documented population from sub-Saharan AfricaGoeury, Thomas; Creary, L E; Brunet, Lydie; Galan, M; ... Sanchez-Mazas, Alicia
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Effect of hybridization with genome exclusion on extinction riskQuilodran, Claudio; Currat, Mathias; Montoya Burgos, Juan Ignacio;
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Ethno-archaeometry in eastern Senegal: The connections between raw materials and finished ceramic productsCantin, N.; Mayor, Anne;
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From Neandertals to modern humans: New data on the UluzzianVilla, Paola; Pollarolo, Luca; Conforti, Jacopo; Marra, Fabrizio; ... Panzeri, Laura
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Genetic history of the African Sahelian populationsČerný, V; Kulichová, I; Poloni, Estella S.; Nunes, Jose Manuel; ... Sanchez-Mazas, Alicia
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Heterogeneous combinatorial expression of Hoxd genes in single cells during limb developmentFabre, Pierre; Leleu, M.; Mascrez, Bénédicte; Lo Giudice, Quentin; ... Duboule, Denis
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Impact of cycling cells and cell cycle regulation on Hydra regenerationBuzgariu, Wanda Christa; Wenger, Yvan; Tcaciuc, Nina; Catunda Lemos, Ana Paula; Galliot, Brigitte
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Les fluctuations environnementales des deux derniers millénaires en Afrique de l'Ouest: premiers résultats de l'étude des terrasses alluviales du ravin de Sansandé (vallée de la Falémé, Sénégal oriental)Davidoux, Sarah; Lespez, Laurent; Garnier, Aline; Rasse, Michel; ... Huysecom, Eric
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Locally-curved geometry generates bending cracks in the African elephant skinMartins, Antonio; Bennett, Nigel C; Clavel, Sylvie; Groenewald, Herman; ... Milinkovitch, Michel C.
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Mandenka from Senegal: Next Generation Sequencing typings reveal very high frequencies of particular HLA class II alleles and haplotypesGoeury, Thomas; Creary, L E; Fernandez-Vina, M A; Tiercy, Jean-Marie; ... Sanchez-Mazas, Alicia
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Non-developmental dimensions of adult regeneration in HydraGalliot, Brigitte; Buzgariu, Wanda Christa; Schenkelaars, Quentin; Wenger, Yvan;
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Range expansion as an explanation for introgression in European wildcatsNussberger, B.; Currat, Mathias; Quilodran, Claudio; Ponta, N.; Keller, L.F.
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Rescue of an aggressive female sexual courtship in mice by CRISPR/Cas9 secondary mutation in vivoZakany, Jozsef; Duboule, Denis;
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Restoring wild-type-like CA1 network dynamics and behavior during adulthood in a mouse model of schizophreniaMarissal, Thomas; Salazar Toro, Rodrigo; Bertollini, Cristina; Mutel, Sophie; ... Carleton, Alan
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The Howiesons Poort lithic sequence of Klipdrift Shelter, southern Cape, South AfricaDouze, Katja; Delagnes, Anne; Wurz, Sarah; Henshilwood, Christopher Stuart;
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Welcome to HLA population reportsSanchez-Mazas, Alicia;

Books

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Un siècle de recherches archéologiques en Côte d’Ivoire : bilan et perspectivesKienon-Kaboré, Timpoko Hélène; Loukou, Yao Serge Bonaventure; Huysecom, Eric;

Book Chapters

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Arylamine N-Acetyltransferases in AnthropologySabbagh, Audrey; Darlu, Pierre; Vangenot, Christelle; Poloni, Estella S.;
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Dynamiques techniques et environnementales dans la vallée de la Falémé (Sénégal) : résultats de la 20ème campagne du programme « Peuplement humain et paléoenvironnement en Afrique »Mayor, Anne; Douze, Katja; Lorenzo Martinez, Maria; Truffa Giachet, Miriam; ... Huysecom, Eric
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Hydra, a model system for deciphering the mechanisms of aging and resistance to agingSchenkelaars, Quentin; Tomczyk, Szymon; Wenger, Yvan; Ekundayo, Kazadi; ... Galliot, Brigitte

Doctoral Thesis

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Archéologie au Boundou: l'émergence d'un royaume Africain dans la séquence protohistorique et historique de la moyenne vallée de la Falémé (Sénégal Oriental)Loukou, Yao Serge Bonaventure;
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Investigating the roles of FER2 and dFOXO in the development and maintenance of dopaminergic neurons in Drosophila melanogasterTas, Damla;
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MetaPIGA 4: an evolutionary computation approach for estimating phylogenetic treesGrbic, Dorde;
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Origins, Regulation and Function of the Hippo pathway components in HydraAl Haddad, Sarah;
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Quantitative and mechanistic characterization of geometric features and patterns in biological systemsPires Nunes Martins, Antonio Filipe;
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Regulation of the human fibrinogen gene cluster through chromatin interactionsEspitia Jaimes, Cindy;

2017

Scientific Articles

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Ancestry and demography and descendants of Iron Age nomads of the Eurasian SteppeUnterländer, Martina; Palstra, Friso; Lazaridis, Iosif; Pilipenko, Aleksandr; ... Burger, Joachim
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Chronologie du Paléolithique ouest africain : premières datations OSL de la Vallée de la Falémé (Sénégal)Lebrun, Brice; Tribolo, Chantal; Chevrier, Benoît; Lespez, Laurent; ... Huysecom, Eric
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Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for ImmunogeneticsSanchez-Mazas, Alicia; Nunes, Jose Manuel; Middleton, D; Sauter, J; ... Fleischhauer, K
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Context- and Output Layer-Dependent Long-Term Ensemble Plasticity in a Sensory CircuitYamada, Yoshiyuki; Bhaukaurally, Khaleel; Madarasz, Tamas; Pouget, Alexandre; ... Carleton, Alan
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Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference databaseVivien, Régis Lionel; Holzmann, Maria; Werner, Inge; Pawlowski, Jan Wojciech; ... Ferrari, Benoît
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Evolution of immune chemoreceptors into sensors of the outside worldDietschi, Quentin; Tuberosa, Joël; Roesingh, Lone Neelchen; Loichot, Gregory; ... Rodriguez, Ivan
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Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cellsRodrigues, Alan R; Yakushiji-Kaminatsui, Nayuta; Atsuta, Yuji; Andrey, Guillaume; ... Tabin, Clifford J
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Investigating population continuity with ancient DNA under a spatially explicit simulation frameworkSilva, Nuno; Rio, Jérémy Marc Xavier; Currat, Mathias;
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Multifactorial genetic divergence processes drive the onset of speciation in an Amazonian fishJardim De Queiroz, Luiz; Torrente-Vilara, Gislene; Quilodran, Claudio; Rodrigues da Costa Doria, Carolina; Montoya Burgos, Juan Ignacio
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Positive selection on sperm ion channels in a brooding brittle star: consequence of life-history traits evolutionWeber, A. A.-T.; Abi-Rached, L.; Galtier, N.; Bernard, A.; ... Chenuil, A.
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The "Enhancement" of Cultural Heritage by AMS Dating: Ethical Questions and Practical ProposalsHuysecom, Eric; Hajdas, Irka; Renold, Marc-André Jean; Synal, Hans-Arno; Mayor, Anne
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The historical spread of Arabian Pastoralists to the eastern African Sahel evidenced by the lactase persistence -13,915*G allele and mitochondrial DNAPriehodová, Edita; Austerlitz, Frédéric; Čížková, Martina; Mokhtar, Mohammed G; ... Černý, Viktor
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The HLA-A, -B and -DRB1 polymorphism in a large dataset of South Brazil bone marrow donors from Rio Grande do SulBoquett, J A; Nunes, Jose Manuel; Buhler, Stéphane; de Oliveira, M Z; ... Sanchez-Mazas, Alicia
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The HLA-B landscape of Africa: Signatures of pathogen-driven selection and molecular identification of candidate alleles to malaria protectionSanchez-Mazas, Alicia; Černý, Viktor; Di, Da; Buhler, Stéphane; ... Nunes, Jose Manuel
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The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methodsMartiniano, Rui; Cassidy, Lara M.; Ó'Maoldúin, Ros; McLaughlin, Russell; ... Bradley, Daniel G.
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