Département de microbiologie et médecine moléculaire

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2021

Scientific Articles

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A rationally designed oral vaccine induces immunoglobulin a in the murine gut that directs the evolution of attenuated salmonella variantsDiard, Médéric; Bakkeren, Erik; Lentsch, Verena; Rocker, Andrea; ... Slack, Emma
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Amino acid metabolism in apicomplexan parasitesKrishnan, Aarti; Soldati-Favre, Dominique;
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An organelle-tethering mechanism couples flagellation to cell division in bacteriaSiwach, Manisha; Kumar, Lokesh; Palani, Saravanan; Muraleedharan, Samada; ... Radhakrishnan, Sunish Kumar
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Calcium signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKGBalestra, Aurélia; Koussis, Konstantinos; Klages Jemelin, Natacha; Howell, Steven A.; ... Brochet, Mathieu
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Clinical, virological and immunological features of a mild case of SARS-CoV-2 re-infectionVetter, Pauline; Cordey, Samuel; Schibler, Manuel; Vieux, Laure; ... Kaiser, Laurent
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Co-translational assembly and localized translation of nucleoporins in nuclear pore complex biogenesisLautier, Ophélie; Penzo, Arianna; Rouvière, Jérôme O; Chevreux, Guillaume; ... Palancade, Benoit
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Diagnostic accuracy of two commercial SARS-CoV-2 antigen-detecting rapid tests at the point of care in community-based testing centersBerger, Alice; Ngo Nsoga, Marie Thérèse; Perez Rodriguez, Francisco Javier; Abi Aad, Yasmine; ... Eckerle, Isabella Anne
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eIF4E3 forms an active eIF4F complex during stresses (eIF4FS) targeting mTOR and re-programs the translatomeWeiss, Benjamin; Allen, George Edward; Kloehn, Joachim; Abid, Karim; ... Curran, Joseph
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Expansion microscopy provides new insights into the cytoskeleton of malaria parasites including the conservation of a conoidBertiaux, Eloise; Balestra, Aurélia; Bournonville, Lorène; Louvel, Vincent; ... Hamel, Virginie
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Happy birthday: 30 years of RNA helicasesValentini, Martina; Linder, Patrick;
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Naturally acquired blocking human monoclonal antibodies to Plasmodium vivax reticulocyte binding protein 2bChan, Li-Jin; Gandhirajan, Anugraha; Carias, Lenore L.; Dietrich, Melanie H.; ... Tham, Wai-Hong
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Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stagesZeeshan, Mohammad; Pandey, Rajan; Subudhi, Amit Kumar; Ferguson, David J P; ... Tewari, Rita
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RNase J1 and J2 are host-encoded factors for plasmid replicationAndrade Guimaraes, Vanessa; Le Scornet, Alexandre; Khemici, Vanessa; Hausmann, Stéphane; ... Redder, Peter
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RSV and HMPV infections in 3d tissue cultures: mechanisms involved in virus-host and virus-virus interactionsGeiser, Johan; Boivin, Guy; Huang, Song; Constant, Samuel; ... Essaidi, Manel
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Structural insights into an atypical secretory pathway kinase crucial for Toxoplasma gondii invasionLentini, Gaëlle; Ben Chaabene, Rouaa; Vadas, Oscar; Ramakrishnan, Chandra; ... Soldati-Favre, Dominique
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The DUF1013 protein TrcR tracks with RNA polymerase to control the bacterial cell cycle and protect against antibioticsDelaby, Marie; Varesio, Lydia M; Degeorges, Laurence; Crosson, Sean; Viollier, Patrick
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The Role of ArlRS and VraSR in Regulating Ceftaroline Hypersusceptibility in Methicillin-Resistant Staphylococcus aureusVillanueva San Martin, Maite; Roch, Mélanie; Lasa, Iñigo; Renzoni, Adriana Maria; Kelley, William
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Visualization of respiratory commensal bacteria in context of their natural host environmentPereira Bonifacio Lopes, Joao Pedro; Schmolke, Mirco;

Doctoral Thesis

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Toxoplasma gondii sphingolipids and an effector protein at the nexus of parasite developmentNyonda, Mary;

2020

Scientific Articles

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A divergent cyclin/cyclin-dependent kinase complex controls the atypical replication of a malaria parasite during gametogony and transmissionBalestra, Aurélia; Zeeshan, Mohammad; Rea, Edward; Pasquarello Mosimann, Carla; ... Brochet, Mathieu
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A high-stringency blueprint of the human proteomeAdhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; ... Baker, Mark S
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Auxiliary domains of the HrpB bacterial DExH-box helicase shape its RNA preferencesHausmann, Stéphane; Geiser, Johan; Vadas, Oscar; Ducret, Verena; ... Valentini, Martina
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Bacterial cell cycle control by citrate synthase independent of enzymatic activityBerge, Matthieu; Pezzatti, Julian; Gonzalez Ruiz, Victor; Degeorges, Laurence; ... Viollier, Patrick
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Biogenesis and discharge of the rhoptries: key organelles for entry and hijack of host cells by the ApicomplexaBen Chaabene, Rouaa; Lentini, Gaëlle; Soldati-Favre, Dominique;
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Brain metastasis cell lines panel: a public resource of organotropic cell linesValiente, Manuel; Van Swearingen, Amanda E D; Anders, Carey K; Bairoch, Amos Marc; ... Winkler, Frank
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C-Mannosylation of Toxoplasma gondii proteins promotes attachment to host cells and parasite virulenceAlbuquerque-Wendt, Andreia; Jacot, Damien; Dos Santos Pacheco, Nicolas; Seegers, Carla; ... Routier, Françoise H.
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cGMP homeostasis in malaria parasites-The key to perceiving and integrating environmental changes during transmission to the mosquitoBrochet, Mathieu; Balestra, Aurélia; Brusini, Lorenzo;
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CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authenticationRobin, Thibault; Capes‐Davis, Amanda; Bairoch, Amos Marc;
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Combined bacteriophage and antibiotic treatment prevents pseudomonas aeruginosa infection of wild type and cftr- epithelial cellsLuscher, Alexandre; Simonin, Juliette Lynn; Falconnet, Léna; Valot, Benoît; ... Van Delden, Christian
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Complete genome sequence of Tacaribe virusHolzerland, Julia; Leske, Anne; Fénéant, Lucie; Garcin, Dominique; ... Groseth, Allison
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CRISPR/cas9-based knockout of GNAQ reveals differences in host cell signaling necessary for egress of apicomplexan parasitesBurda, Paul-Christian; Bisio Sabaris, Hugo; Marq, Jean-Baptiste; Soldati-Favre, Dominique; Heussler, Volker T.
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Daily viral kinetics and innate and adaptive immune response assessment in COVID-19: a case seriesVetter, Pauline; Eberhardt, Christiane Sigrid; Meyer, Benjamin; Martinez Murillo, Paola Andréa; ... Eckerle, Isabella Anne
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Development and Validation of the Elecsys Anti-SARS-CoV-2 Immunoassay as a Highly Specific Tool for Determining Past Exposure to SARS-CoV-2Muench, Peter; Jochum, Simon; Wenderoth, Verena; Ofenloch-Haehnle, Beatus; ... Riedel, Alexander
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Diagnostic accuracy of Augurix COVID-19 IgG serology rapid testAndrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas
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Essential function of the alveolin network in the subpellicular microtubules and conoid assembly in Toxoplasma gondiiTosetti, Nicolo; Dos Santos Pacheco, Nicolas; Bertiaux, Eloise; Maco, Bohumil; ... Soldati-Favre, Dominique
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Evolution, Composition, Assembly, and Function of the Conoid in ApicomplexaDos Santos Pacheco, Nicolas; Tosetti, Nicolo; Koreny, Ludek; Waller, Ross F.; Soldati-Favre, Dominique
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Evolving MRSA: high-level β-lactam resistance in Staphylococcus aureus is associated with RNA Polymerase alterations and fine tuning of gene expressionPanchal, Viralkumar V; Griffiths, Caitlin; Mosaei, Hamed; Bilyk, Bohdan; ... Foster, Simon J
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FKBP10 regulates protein translation to sustain lung cancer growthRamadori, Giorgio; Ioris, Rafael M; Villanyi, Zoltan; Firnkes, Raquel; ... Coppari, Roberto
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Functional and computational genomics reveal unprecedented flexibility in stage-specific Toxoplasma metabolismKrishnan, Aarti; Kloehn, Joachim; Lunghi, Matteo; Chiappino-Pepe, Anush; ... Soldati-Favre, Dominique
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Head-to-head accuracy comparison of three commercial COVID-19 IgM/IgG serology rapid testsAndrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas
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Histone exchange is associated with activator function at transcribed promoters and with repression at histone lociKassem, Sari; Ferrari, Paolo; Hughes, Amanda L; Soudet, Julien; ... Strubin, Michel
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Identification of immunodominant linear epitopes from SARS-CoV-2 patient plasmaFarrera Soler, Lluc; Daguer, Jean Pierre; Barluenga Badiola, Sofia; Vadas, Oscar; ... Winssinger, Nicolas
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Influenza A viruses limit NLRP3-NEK7-complex formation and pyroptosis in human macrophagesBoal P. T. De Carvalho, Inès; Mazel-Sanchez, Beryl; Silva, Filo; Garnier, Laure; ... Schmolke, Mirco
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Insights into the global effect on Staphylococcus aureus growth arrest by induction of the endoribonuclease MazF toxinSierra Miranda, Roberto Mario; Prados, Julien; Panasenko, Olesya; Andrey, Diego Olivier; ... Renzoni, Adriana Maria
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Integrative and quantitative view of the CtrA regulatory network in a stalked budding bacteriumLeicht, Oliver; van Teeseling, Muriel C F; Panis, Gaël; Reif, Celine; ... Thanbichler, Martin
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Interferon-dependent and respiratory virus-specific interference in dual infections of airway epitheliaEssaidi, Manel; Geiser, Johan; Huang, Song; Constant, Samuel; ... Tapparel, Caroline
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Loss of bacterial cell pole stabilization in caulobacter crescentus sensitizes to outer membrane stress and peptidoglycan-directed antibioticsVallet, Simon; Hansen, Lykke Haastrup; Bistrup, Freja Cecillie; Laursen, Signe Aagaard; ... Kirkpatrick, Clare
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Metabolite salvage and restriction during infection — a tug of war between Toxoplasma gondii and its hostKloehn, Joachim; Hammoudi, Pierre-Mehdi; Soldati-Favre, Dominique;
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Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assemblyZhang, Shan; Reljić, Boris; Liang, Chao; Kerouanton, Baptiste; ... Ho, Lena
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Modified cyclodextrins as broad-spectrum antiviralsJones, Samuel T; Cagno, Valeria; Janeček, Matej; Ortiz, Daniel; ... Tapparel, Caroline
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Molecular architecture of the DNA-binding sites of the P-loop ATPases MipZ and ParA from Caulobacter crescentusCorrales-Guerrero, Laura; He, Binbin; Refes, Yacine; Panis, Gaël; ... Thanbichler, Martin
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Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondiiKloehn, Joachim; Oppenheim, Rebecca; Siddiqui, Ghizal; De Bock, Pieter-Jan; ... Soldati-Favre, Dominique
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NCoR1 fine‐tunes type‐I IFN response in cDC1 dendritic cells by directly regulating Myd88‐IRF7 axis under TLR9Ahad, Abdul; Smita, Shuchi; Mishra, Gyan Prakash; Biswas, Viplov Kumar; ... Raghav, Sunil K.
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Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondiiKuby, Madlaina; Hammoudi, Pierre-Mehdi; Dogga, Sunil Kumar; Pages, Stéphane; ... Soldati-Favre, Dominique
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PfMAP-2 is essential for male gametogenesis in the malaria parasite Plasmodium falciparumHitz, Eva; Balestra, Aurélia; Brochet, Mathieu; Voss, Till S;
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Recommendations for the nomenclature of enteroviruses and rhinovirusesSimmonds, P; Gorbalenya, A E; Harvala, H; Hovi, T; ... Zell, R
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Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome ProjectOmenn, Gilbert S; Lane, Lydie; Overall, Christopher M; Cristea, Ileana M; ... Deutsch, Eric W
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Respiratory tissue-associated commensal bacteria offer therapeutic potential against pneumococcal colonizationYildiz, Soner; Pereira Bonifacio Lopes, Joao Pedro; Berge, Matthieu; Gonzalez Ruiz, Victor; ... Schmolke, Mirco
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Ribosome pausing, a dangerous necessity for co-translational eventsCollart, Martine; Weiss, Benjamin;
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Sars-cov-2 inhibition by sulfonated compoundsGasbarri, Matteo; V'kovski, Philip; Torriani, Giulia; Thiel, Volker; ... Cagno, Valeria
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SARS-CoV-2 viral load in the upper respiratory tract of children and adults with early acute COVID-19Baggio, Stéphanie; L'Huillier, Arnaud; Yerly Ferrillo, Sabine; Bellon, Mathilde Anne; ... Eckerle, Isabella Anne
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Secretion relieves translational co-repression by a specialized flagellin paralogArdissone, Silvia; Kint, Nicolas; Petrignani, Bianca; Panis, Gaël; Viollier, Patrick
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Sendai virus, a strong inducer of anti-lentiviral state in ovine cellsde Pablo-Maiso, Lorena; Echeverría, Irache; Rius-Rocabert, Sergio; Luján, Lluís; ... Reina, Ramsés
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Seroprevalence of anti-SARS-CoV-2 IgG antibodies in Geneva, Switzerland (SEROCoV-POP): a population-based studyStringhini, Silvia; Wisniak, ania; Piumatti, Giovanni; Azman, Andrew S; ... Guessous, Idris
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Specificity in glycosylation of multiple flagellins by the modular and cell cycle regulated glycosyltransferase FlmGArdissone, Silvia; Kint, Nicolas; Viollier, Patrick;
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Supply and demand - heme synthesis, salvage and utilization by ApicomplexaKloehn, Joachim; Harding, Clare R; Soldati-Favre, Dominique;
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Surface sensing triggers a broad-spectrum antimicrobial response in Pseudomonas aeruginosaGdaniec, Bartosz Gérard; Allard, Pierre-Marie; Ferreira Queiroz, Emerson; Wolfender, Jean-Luc; ... Kohler, Thilo
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Targeting Plasmepsins —an Achilles’ heel of the malaria parasiteBurrows, Jeremy N.; Soldati-Favre, Dominique;
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The ABCD database: a repository for chemically defined antibodiesDu Fresne Von Hohenesche, Wanessa Cristina; Gasteiger, Elisabeth; Marcatili, Paolo; Duek, Paula Debora; ... Cosson, Pierre
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The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in CaulobacterWoldemeskel, Selamawit Abi; Daitch, Allison K; Alvarez, Laura; Panis, Gaël; ... Goley, Erin D
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The CzcCBA efflux system requires the CadA P-type ATPase for timely expression upon zinc excess in pseudomonas aeruginosaDucret, Verena; Gonzalez, Manuel R.; Leoni, Sara; Valentini, Martina; Perron, Karl
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The DEAD-box RNA helicase CshA is required for fatty acid homeostasis in Staphylococcus aureusKhemici, Vanessa; Prados, Julien; Petrignani, Bianca; Di Nolfi, Benjamin; ... Linder, Patrick
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The feature-viewer: a visualization tool for positional annotations on a sequencePaladin, Lisanna; Schaeffer, Mathieu; Gaudet, Pascale; Zahn, Monique; ... Bairoch, Amos Marc
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The functionally unannotated proteome of human male tissues: a shared resource to uncover new protein functions associated with reproductive biologyVandenbrouck, Yves; Pineau, Charles; Lane, Lydie;
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The neXtProt knowledgebase in 2020: data, tools and usability improvementsZahn, Monique; Michel, Pierre-André Albert; Gateau, Alain; Nikitin, Frédéric; ... Lane, Lydie
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The ZIP code of vesicle trafficking in apicomplexa: SEC1/Munc18 and SNARE proteinsBisio Sabaris, Hugo; Ben Chaabene, Rouaa; Sabitzki, Ricarda; Maco, Bohumil; ... Soldati-Favre, Dominique
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Toxoplasma gondii GRA60 is an effector protein that modulates host cell autonomous immunity and contributes to virulenceNyonda, Mary; Hammoudi, Pierre-Mehdi; Ye, Shu; Maire, Jessica; ... Soldati-Favre, Dominique
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Validation and clinical evaluation of a SARS-CoV-2 surrogate virus neutralisation test (sVNT)Meyer, Benjamin; Reimerink, Johan; Torriani, Giulia; Brouwer, Fion; ... Reusken, Chantal
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Validation of a commercially available SARS-CoV-2 serological immunoassayMeyer, Benjamin; Torriani, Giulia; Yerly Ferrillo, Sabine; Mazza, Léna; ... Kaiser, Laurent
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What will neXtProt help us achieve in 2020 and beyond?Zahn, Monique; Lane, Lydie;

Book Chapters

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Chlamydia cell division and differentiationLiechtti, George W; Viollier, Patrick; Greub, Gilbert; Maurelli, Anthony T;
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CRISPR/cas9-mediated generation of tetracycline repressor-based inducible knockdown in toxoplasma gondiiJacot, Damien; Soldati-Favre, Dominique;
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The actomyosin systems in apicomplexaFrenal, Karine; Krishnan, Aarti; Soldati-Favre, Dominique;

Doctoral Thesis

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Cell cycle, motility and invasion: CDPK4 is a pleiotropic regulator across the lifecycle of parasites causing malariaFang, Hanwei;
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Characterization of key players in specialized organelles function in Toxoplasma gondiiDubois, David Jean;
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HBx and the Smc5/6 restriction factorZotter, Lisa Maria;
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Metabolic networks governing Toxoplasma gondii persistence and transmissionKrishnan, Aarti;

2019

Scientific Articles

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A bifunctional ATPase drives tad pilus extension and retractionEllison, Courtney K; Kan, Jingbo; Chlebek, Jennifer L; Hummels, Katherine R; ... Brun, Yves V
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A spoIID homolog cleaves glycan strands at the chlamydial division septumJacquier, Nicolas; Yadav, Akhilesh K; Pillonel, Trestan; Viollier, Patrick; ... Greub, Gilbert Daniel
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Advances in identifying and characterizing the human proteomePaik, Young-Ki; Overall, Christopher M; Corrales, Fernando; Deutsch, Eric W; ... Omenn, Gilbert S
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Bacterial cell cycle and growth phase switch by the essential transcriptional regulator CtrA.Delaby, Marie; Panis, Gaël; Viollier, Patrick;
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Biogenesis and secretion of micronemes in Toxoplasma gondiiDubois, David Jean; Soldati-Favre, Dominique;
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Blinded testing of function annotation for uPE1 proteins by I-TASSER/COFACTOR pipeline using the 2018-2019 additions to neXtProt and the CAFA3 challengeZhang, Chengxin; Lane, Lydie; Omenn, Gilbert S; Zhang, Yang;
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Cell lines as biological models: practical steps for more reliable researchCapes-Davis, Amanda; Bairoch, Amos Marc; Barrett, Tanya; Burnett, Edward C; ... Tian, Fang
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Choosing an Optimal Sample Preparation in Caulobacter crescentus for Untargeted Metabolomics ApproachesPezzatti, Julian; Berge, Matthieu; Boccard, Julien; Codesido Sanchez, Santiago; ... Rudaz, Serge
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Co-translational assembly of proteasome subunits in NOT1-containing assemblysomesPanasenko, Olesya; Somasekharan, Syam Prakash; Villanyi, Zoltan; Zagatti, Marina; ... Collart, Martine
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CXCL4 assembles DNA into liquid crystalline complexes to amplify TLR9-mediated interferon-α production in systemic sclerosisLande, Roberto; Lee, Ernest Y; Palazzo, Raffaella; Marinari, Barbara; ... Frasca, Loredana
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Detection of dicistroviruses RNA in blood of febrile Tanzanian childrenCordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent
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Fecal components modulate human astrovirus infectivity in cells and reconstituted intestinal tissuesPerez Rodriguez, Francisco Javier; Vieille, Gaël; Turin, Lara; Yildiz, Soner; ... Kaiser, Laurent
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Genetic resistance to DEHP-induced transgenerational endocrine disruptionStenz, Ludwig; Rahban, Rita; Prados, Julien; Nef, Serge; Giacobino, Ariane
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