Département de microbiologie et médecine moléculaire

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2022

Scientific Articles

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Toxoplasma gondii phosphatidylserine flippase complex ATP2B-CDC50.4 critically participates in microneme exocytosisBisio Sabaris, Hugo; Krishnan, Aarti; Marq, Jean-Baptiste; Soldati-Favre, Dominique;
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A single respiratory tract infection early in life reroutes healthy microbiome development and affects adult metabolism in a preclinical animal modelYildiz, Soner; Mazel-Sanchez, Beryl; Pereira Bonifacio Lopes, Joao Pedro; Schmolke, Mirco;
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Enhanced fitness of SARS-CoV-2 variant of concern Alpha but not BetaUlrich, Lorenz; Halwe, Nico Joel; Taddeo, Adriano; Ebert, Nadine; ... Benarafa, Charaf
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Expansion microscopy of Plasmodium gametocytes reveals the molecular architecture of a bipartite microtubule organisation centre coordinating mitosis with axoneme assemblyRashpa, Ravish; Brochet, Mathieu;
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N-Acetylation of secreted proteins is widespread in Apicomplexa and independent of acetyl-CoA ER-transporter AT1Nyonda, Mary; Boyer, Jean-Baptiste; Belmudes, Lucid; Krishnan, Aarti; ... Giglione, Carmela
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Pantothenate biosynthesis is critical for chronic infection by the neurotropic parasite Toxoplasma gondiiLunghi, Matteo; Kloehn, Joachim; Krishnan, Aarti; Varesio, Emmanuel; ... Soldati-Favre, Dominique
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SARS-CoV-2 antigen-detecting rapid tests for the delta variantBekliz, Meriem; Adea, Kenneth; Essaidi-Laziosi, Manel; Sacks, Jilian A; ... Eckerle, Isabella Anne
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Secondary structure and x-ray crystallographic analysis of the glideosome-associated connector (GAC) from Toxoplasma gondiiKumar, Amit; Zhang, Xu; Vadas, Oscar; Stylianou, Fisentzos A.; ... Matthews, Steve
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Sequential infections with rhinovirus and influenza modulate the replicative capacity of SARS-CoV-2 in the upper respiratory tractEssaidi-Laziosi, Manel; Alvarez, Catia; Puhach, Olha; Sattonnet-Roche, Pascale; ... Eckerle, Isabella Anne
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Surface hydration protects cystic fibrosis airways from infection by restoring junctional networksSimonin, Juliette Lynn; Luscher, Alexandre; Losa, Davide; Badaoui, Mehdi; ... Chanson, Marc

Doctoral Thesis

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Characterization Of Molecular Effectors Causing Unusual Sensitivity Of The Gram-Negative Caulobacter Crescentus To VancomycinVallet, Simon-Ulysse;
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In vitro characterization of MDA5 variants associated with a dominant negative phenotype upon viral infectionsCourrier, Alexis;
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Synthesis and salvage of vitamins B5 and B6 by toxoplasma gondiiLunghi, Matteo;

2021

Scientific Articles

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A rationally designed oral vaccine induces immunoglobulin a in the murine gut that directs the evolution of attenuated salmonella variantsDiard, Médéric; Bakkeren, Erik; Lentsch, Verena; Rocker, Andrea; ... Slack, Emma
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Amino acid metabolism in apicomplexan parasitesKrishnan, Aarti; Soldati-Favre, Dominique;
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An antiviral trap made of protein nanofibrils and iron oxyhydroxide nanoparticlesPalika, Archana; Armanious, Antonius; Rahimi, Akram; Medaglia, Chiara; ... Mezzenga, Raffaele
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An organelle-tethering mechanism couples flagellation to cell division in bacteriaSiwach, Manisha; Kumar, Lokesh; Palani, Saravanan; Muraleedharan, Samada; ... Radhakrishnan, Sunish Kumar
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Blood virosphere in febrile Tanzanian childrenCordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent
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C21orf91 regulates oligodendroglial precursor cell fate-a switch in the glial lineage?Reiche, Laura; Göttle, Peter; Lane, Lydie; Duek, Paula Debora; ... Küry, Patrick
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Calcium signals critical for egress and gametogenesis in malaria parasites depend on a multipass membrane protein that interacts with PKGBalestra, Aurélia; Koussis, Konstantinos; Klages Jemelin, Natacha; Howell, Steven A.; ... Brochet, Mathieu
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Clinical, virological and immunological features of a mild case of SARS-CoV-2 re-infectionVetter, Pauline; Cordey, Samuel; Schibler, Manuel; Vieux, Laure; ... Kaiser, Laurent
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Co-translational assembly and localized translation of nucleoporins in nuclear pore complex biogenesisLautier, Ophélie; Penzo, Arianna; Rouvière, Jérôme O; Chevreux, Guillaume; ... Palancade, Benoit
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Concurrent mutations in RNA-dependent RNA polymerase and spike protein emerged as the epidemiologically most successful SARS-CoV-2 variantIlmjarv, Sten; Abdul, Fabien; Acosta Gutierrez, Silvia; Estarellas Martin, Carolina; ... Krause, Karl-Heinz
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Coupling auxin-inducible degron system with ultrastructure expansion microscopy to accelerate the discovery of gene function in toxoplasma gondiiDos Santos Pacheco, Nicolas; Soldati-Favre, Dominique;
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Diagnostic accuracy of Panbio rapid antigen tests on oropharyngeal swabs for detection of SARS-CoV-2Ngo Nsoga, Marie Thérèse; Kronig, Ilona; Perez Rodriguez, Francisco Javier; Sattonnet-Roche, Pascale; ... Eckerle, Isabella Anne
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Diagnostic accuracy of two commercial SARS-CoV-2 antigen-detecting rapid tests at the point of care in community-based testing centersBerger, Alice; Ngo Nsoga, Marie Thérèse; Perez Rodriguez, Francisco Javier; Abi Aad, Yasmine; ... Eckerle, Isabella Anne
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Dual role of a (p)ppGpp- and (p)ppApp-degrading enzyme in biofilm formation and interbacterial antagonismWieland, Steinchen; Ahmad, Shehryar; Valentini, Martina; Eilers, Kira; ... Bange, Gert
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eIF4E3 forms an active eIF4F complex during stresses (eIF4FS) targeting mTOR and re-programs the translatomeWeiss, Benjamin; Allen, George Edward; Kloehn, Joachim; Abid, Karim; ... Curran, Joseph
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Expansion microscopy provides new insights into the cytoskeleton of malaria parasites including the conservation of a conoidBertiaux, Eloise; Balestra, Aurélia; Bournonville, Lorène; Louvel, Vincent; ... Hamel, Virginie
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Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate studentsDuek, Paula Debora; Mary, Camille; Zahn-Zabal, Monique; Bairoch, Amos Marc; Lane, Lydie
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Global Analysis of the Zinc Homeostasis Network in Pseudomonas aeruginosa and Its Gene Expression DynamicsDucret, Verena; Abdou, Melina; Goncalves Milho, Catarina; Leoni, Sara; ... Perron, Karl
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Happy birthday: 30 years of RNA helicasesValentini, Martina; Linder, Patrick;
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Influenza A viruses balance ER stress with host protein synthesis shutoffMazel-Sanchez, Beryl; Iwaszkiewicz, Justyna; Pereira Bonifacio Lopes, Joao Pedro; Silva, Filo; ... Schmolke, Mirco
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Insights into household transmission of SARS-CoV-2 from a population-based serological surveyBi, Qifang; Lessler, Justin; Eckerle, Isabella Anne; Lauer, Stephen A; ... Trono, Didier
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Interferon lambda delays the emergence of influenza virus resistance to oseltamivirMedaglia, Chiara; Zwygart, Arnaud Charles-Antoine; Silva, Paulo Jacob; Constant, Samuel; ... Tapparel, Caroline
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MazF toxin causes alterations in staphylococcus aureus transcriptome, translatome and proteome that underlie bacterial dormancyBezrukov, Fedor; Prados, Julien; Renzoni, Adriana Maria; Panasenko, Olesya;
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Methylene Blue has a potent antiviral activity against SARS-CoV-2 and H1N1 influenza virus in the absence of UV-activation in vitroCagno, Valeria; Medaglia, Chiara; Cerny, Andreas; Cerny, Thomas; ... Tapparel, Caroline
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Modeling poliovirus infection using human engineered neural tissue enriched with motor neuron derived from embryonic stem cellsCosset, Erika; Hibaoui, Youssef; Ilmjärv, Sten; Dietrich, Pierre-Yves; ... Krause, Karl-Heinz
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Nanos gigantium humeris insidentes: old papers informing new research into Toxoplasma gondiiLodoen, Melissa B.; Smith, Nicholas C.; Soldati-Favre, Dominique; Ferguson, David J.P.; van Dooren, Giel G.
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Naturally acquired blocking human monoclonal antibodies to Plasmodium vivax reticulocyte binding protein 2bChan, Li-Jin; Gandhirajan, Anugraha; Carias, Lenore L.; Dietrich, Melanie H.; ... Tham, Wai-Hong
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Non‐toxic virucidal macromolecules show high efficacy against influenza virus ex vivo and in vivoKocabiyik, Ozgun; Cagno, Valeria; Silva, Paulo Jacob; Zhu, Yong; ... Stellacci, Francesco
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Not4 and Not5 modulate translation elongation by Rps7A ubiquitination, Rli1 moonlighting, and condensates that exclude eIF5AAllen, George Edward; Panasenko, Olesya; Villanyi, Zoltan; Zagatti, Marina; ... Collart, Martine
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Novel SARS-CoV-2 variants: the pandemics within the pandemicBoehm, Erik; Kronig, Ilona; Neher, Richard A; Eckerle, Isabella Anne; ... Kaiser, Laurent
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Pantothenate and CoA biosynthesis in Apicomplexa and their promise as antiparasitic drug targetsde Vries, Laura E.; Lunghi, Matteo; Krishnan, Aarti; Kooij, Taco W. A.; Soldati-Favre, Dominique
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Protein phosphatase 1 regulates atypical mitotic and meiotic division in Plasmodium sexual stagesZeeshan, Mohammad; Pandey, Rajan; Subudhi, Amit Kumar; Ferguson, David J P; ... Tewari, Rita
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Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in SwitzerlandChen, Chaoran; Nadeau, Sarah Ann; Topolsky, Ivan; Manceau, Marc; ... Stadler, Tanja
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Revisiting the role of toxoplasma gondii ERK7 in the maintenance and stability of the apical complexDos Santos Pacheco, Nicolas; Tosetti, Nicolo; Krishnan, Aarti; Haase, Romuald; ... Soldati-Favre, Dominique
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RNase J1 and J2 are host-encoded factors for plasmid replicationAndrade Guimaraes, Vanessa; Le Scornet, Alexandre; Khemici, Vanessa; Hausmann, Stéphane; ... Redder, Peter
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Robust innate responses to SARS-CoV-2 in children resolve faster than in adults without compromising adaptive immunityVono, Maria; Csaki Huttner, Angela; Lemeille, Sylvain; Martinez Murillo, Paola Andréa; ... Didierlaurent, Arnaud
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RSV and HMPV infections in 3d tissue cultures: mechanisms involved in virus-host and virus-virus interactionsGeiser, Johan; Boivin, Guy; Huang, Song; Constant, Samuel; ... Essaidi, Manel
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SARS-CoV-2 rapid diagnostic tests for emerging variantsBekliz, Meriem; Adea, Kenneth; Essaidi-Laziosi, Manel; Sacks, Jilian A; ... Eckerle, Isabella Anne
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Seroprevalence of anti-SARS-CoV-2 IgG antibodies, risk factors for infection and associated symptoms in Geneva, Switzerland: a population-based studyRichard, Aude; Wisniak, ania; Perez-Saez, Javier; Garrison-Desany, Henri; ... Stringhini, Silvia
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Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) viral load kinetics in symptomatic children, adolescents, and adultsBellon, Mathilde Anne; Baggio, Stéphanie; Jacquerioz, Frédérique Aline; Spechbach, Hervé; ... Eckerle, Isabella Anne
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Specificity and modularity of flagellin nonulosonic acid glycosyltransferasesKint, Nicolas; Unay, Jovelyn; Viollier, Patrick;
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Structural insights into an atypical secretory pathway kinase crucial for Toxoplasma gondii invasionLentini, Gaëlle; Ben Chaabene, Rouaa; Vadas, Oscar; Ramakrishnan, Chandra; ... Soldati-Favre, Dominique
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The CTPase activity of ParB determines the size and dynamics of prokaryotic DNA partition complexesOsorio-Valeriano, Manuel; Altegoer, Florian; Das, Chandan K; Steinchen, Wieland; ... Thanbichler, Martin
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The DEAD-box RNA helicase RhlE2 is a global regulator of Pseudomonas aeruginosa lifestyle and pathogenesisHausmann, Stéphane; Gonzalez, Diego; Geiser, Johan; Valentini, Martina;
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The DUF1013 protein TrcR tracks with RNA polymerase to control the bacterial cell cycle and protect against antibioticsDelaby, Marie; Varesio, Lydia M; Degeorges, Laurence; Crosson, Sean; Viollier, Patrick
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The metabolic pathways and transporters of the plastid organelle in ApicomplexaKloehn, Joachim; Lacour, Clément; Soldati-Favre, Dominique;
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The Role of ArlRS and VraSR in Regulating Ceftaroline Hypersusceptibility in Methicillin-Resistant Staphylococcus aureusVillanueva San Martin, Maite; Roch, Mélanie; Lasa, Iñigo; Renzoni, Adriana Maria; Kelley, William
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The tyrosine kinase inhibitor nilotinib inhibits SARS‐CoV‐2 in vitroCagno, Valeria; Magliocco, Gaëlle; Tapparel, Caroline; Daali, Youssef;
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Untargeted metabolomics uncovers the essential lysine transporter in toxoplasma gondiiKloehn, Joachim; Lunghi, Matteo; Varesio, Emmanuel; Dubois, David; Soldati-Favre, Dominique
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Vertical and horizontal dissemination of an incC plasmid harbouring rmtb 16s rRNA methylase gene, conferring resistance to plazomicin, among invasive ST258 and ST16 KPC-producing Klebsiella pneumoniaeRoch, Mélanie; Sierra Miranda, Roberto Mario; Sands, Kirsty; Martins, Willames M.B.S.; ... Andrey, Diego Olivier
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Visualization of respiratory commensal bacteria in context of their natural host environmentPereira Bonifacio Lopes, Joao Pedro; Schmolke, Mirco;

Doctoral Thesis

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Investigating the pathogenic diversity of enterovirusesCordeiro Filipe, Inès;
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Involvement of the not-condensates in protein translationZagatti, Marina;
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Regulation of an efflux pump and otherB-lactams resistance factors in Caulobacter crescentusCostafrolaz, Jordan;
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Toxoplasma gondii sphingolipids and an effector protein at the nexus of parasite developmentNyonda, Mary;

2020

Scientific Articles

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A divergent cyclin/cyclin-dependent kinase complex controls the atypical replication of a malaria parasite during gametogony and transmissionBalestra, Aurélia; Zeeshan, Mohammad; Rea, Edward; Pasquarello Mosimann, Carla; ... Brochet, Mathieu
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A high-stringency blueprint of the human proteomeAdhikari, Subash; Nice, Edouard C; Deutsch, Eric W; Lane, Lydie; ... Baker, Mark S
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A perspective on organoids for virology researchSridhar, Adithya; Simmini, Salvatore; Ribeiro, Carla M. S.; Tapparel, Caroline; ... Wolthers, Katja
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Auxiliary domains of the HrpB bacterial DExH-box helicase shape its RNA preferencesHausmann, Stéphane; Geiser, Johan; Vadas, Oscar; Ducret, Verena; ... Valentini, Martina
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Bacterial cell cycle control by citrate synthase independent of enzymatic activityBerge, Matthieu; Pezzatti, Julian; Gonzalez Ruiz, Victor; Degeorges, Laurence; ... Viollier, Patrick
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Biogenesis and discharge of the rhoptries: key organelles for entry and hijack of host cells by the ApicomplexaBen Chaabene, Rouaa; Lentini, Gaëlle; Soldati-Favre, Dominique;
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Brain metastasis cell lines panel: a public resource of organotropic cell linesValiente, Manuel; Van Swearingen, Amanda E D; Anders, Carey K; Bairoch, Amos Marc; ... Winkler, Frank
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C-Mannosylation of Toxoplasma gondii proteins promotes attachment to host cells and parasite virulenceAlbuquerque-Wendt, Andreia; Jacot, Damien; Dos Santos Pacheco, Nicolas; Seegers, Carla; ... Routier, Françoise H.
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cGMP homeostasis in malaria parasites-The key to perceiving and integrating environmental changes during transmission to the mosquitoBrochet, Mathieu; Balestra, Aurélia; Brusini, Lorenzo;
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CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authenticationRobin, Thibault; Capes‐Davis, Amanda; Bairoch, Amos Marc;
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Combined bacteriophage and antibiotic treatment prevents pseudomonas aeruginosa infection of wild type and cftr- epithelial cellsLuscher, Alexandre; Simonin, Juliette Lynn; Falconnet, Léna; Valot, Benoît; ... Van Delden, Christian
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Complete genome sequence of Tacaribe virusHolzerland, Julia; Leske, Anne; Fénéant, Lucie; Garcin, Dominique; ... Groseth, Allison
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CRISPR/cas9-based knockout of GNAQ reveals differences in host cell signaling necessary for egress of apicomplexan parasitesBurda, Paul-Christian; Bisio Sabaris, Hugo; Marq, Jean-Baptiste; Soldati-Favre, Dominique; Heussler, Volker T.
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Daily viral kinetics and innate and adaptive immune response assessment in COVID-19: a case seriesVetter, Pauline; Eberhardt, Christiane Sigrid; Meyer, Benjamin; Martinez Murillo, Paola Andréa; ... Eckerle, Isabella Anne
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Development and Validation of the Elecsys Anti-SARS-CoV-2 Immunoassay as a Highly Specific Tool for Determining Past Exposure to SARS-CoV-2Muench, Peter; Jochum, Simon; Wenderoth, Verena; Ofenloch-Haehnle, Beatus; ... Riedel, Alexander
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Diagnostic accuracy of Augurix COVID-19 IgG serology rapid testAndrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas
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Essential function of the alveolin network in the subpellicular microtubules and conoid assembly in Toxoplasma gondiiTosetti, Nicolo; Dos Santos Pacheco, Nicolas; Bertiaux, Eloise; Maco, Bohumil; ... Soldati-Favre, Dominique
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Evolution, Composition, Assembly, and Function of the Conoid in ApicomplexaDos Santos Pacheco, Nicolas; Tosetti, Nicolo; Koreny, Ludek; Waller, Ross F.; Soldati-Favre, Dominique
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Evolving MRSA: high-level β-lactam resistance in Staphylococcus aureus is associated with RNA Polymerase alterations and fine tuning of gene expressionPanchal, Viralkumar V; Griffiths, Caitlin; Mosaei, Hamed; Bilyk, Bohdan; ... Foster, Simon J
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Examining and Fine-tuning the Selection of Glycan Compositions with GlyConnect CompozitorRobin, Thibault; Mariethoz, Julien; Lisacek, Frédérique;
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FKBP10 regulates protein translation to sustain lung cancer growthRamadori, Giorgio; Ioris, Rafael M; Villanyi, Zoltan; Firnkes, Raquel; ... Coppari, Roberto
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Functional and computational genomics reveal unprecedented flexibility in stage-specific Toxoplasma metabolismKrishnan, Aarti; Kloehn, Joachim; Lunghi, Matteo; Chiappino-Pepe, Anush; ... Soldati-Favre, Dominique
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Head-to-head accuracy comparison of three commercial COVID-19 IgM/IgG serology rapid testsAndrey, Diego Olivier; Cohen, Patrick; Meyer, Benjamin; Torriani, Giulia; ... Vuilleumier, Nicolas
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Histone exchange is associated with activator function at transcribed promoters and with repression at histone lociKassem, Sari; Ferrari, Paolo; Hughes, Amanda L; Soudet, Julien; ... Strubin, Michel
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Identification of immunodominant linear epitopes from SARS-CoV-2 patient plasmaFarrera Soler, Lluc; Daguer, Jean Pierre; Barluenga Badiola, Sofia; Vadas, Oscar; ... Winssinger, Nicolas
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Influenza A viruses limit NLRP3-NEK7-complex formation and pyroptosis in human macrophagesBoal P. T. De Carvalho, Inès; Mazel-Sanchez, Beryl; Silva, Filo; Garnier, Laure; ... Schmolke, Mirco
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Insights into the global effect on Staphylococcus aureus growth arrest by induction of the endoribonuclease MazF toxinSierra Miranda, Roberto Mario; Prados, Julien; Panasenko, Olesya; Andrey, Diego Olivier; ... Renzoni, Adriana Maria
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Integrative and quantitative view of the CtrA regulatory network in a stalked budding bacteriumLeicht, Oliver; van Teeseling, Muriel C F; Panis, Gaël; Reif, Celine; ... Thanbichler, Martin
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Interferon-dependent and respiratory virus-specific interference in dual infections of airway epitheliaEssaidi, Manel; Geiser, Johan; Huang, Song; Constant, Samuel; ... Tapparel, Caroline
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Loss of bacterial cell pole stabilization in caulobacter crescentus sensitizes to outer membrane stress and peptidoglycan-directed antibioticsVallet, Simon; Hansen, Lykke Haastrup; Bistrup, Freja Cecillie; Laursen, Signe Aagaard; ... Kirkpatrick, Clare
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Metabolite salvage and restriction during infection — a tug of war between Toxoplasma gondii and its hostKloehn, Joachim; Hammoudi, Pierre-Mehdi; Soldati-Favre, Dominique;
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Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assemblyZhang, Shan; Reljić, Boris; Liang, Chao; Kerouanton, Baptiste; ... Ho, Lena
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