Centre universitaire d'informatique

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2020

Scientific Articles

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CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authenticationRobin, Thibault; Capes‐Davis, Amanda; Bairoch, Amos Marc;
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Norine: Update of the Nonribosomal Peptide ResourceFlissi, Areski; Ricart Altimiras, Emma; Campart, Clémentine; Chevalier, Mickael; ... Pupin, Maude
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Precision global health: a roadmap for augmented actionSheath, Danny; Ruiz De Castaneda, Rafael Luis; Bempong, Nefti-Eboni; Raviglione, Mario; ... Flahault, Antoine
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Sharing Emotions Contributes to Regulating Collaborative Intentions in Group Problem-SolvingAvry, Sunny; Molinari, Gaëlle; Betrancourt, Mireille; Chanel, Guillaume;
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Structure and engineering of tandem repeat lectinsNotova, Simona; Bonnardel, François; Lisacek, Frédérique; Varrot, Annabelle; Imberty, Anne

Conference Proceedings

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A Formalism to Model Higher-Order FunctionMorard, Damien;
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An Annotation System for Specifying Aliasing Invariants on Object Fields. Proceedings of the 4th International Conference on the Art, Science and Engineering of ProgrammingCoet, Aurélien;

Proceedings Chapters

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An Exploratory Approach for Governance of Society for Smarter LifeLeonard, Michel Paul; Yurchyshyna, Anastasiya;

Working paper

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CERTIFY : Leveraging fact-checkers and crowdsourcing to provide informed opinions on unreliable or misleading informationAlrafeea, Fayez Hussein Fayez; Zimmermann, Basile; Di Marzo Serugendo, Giovanna;

Doctoral Thesis

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Hyper-bag-graphs and their applications : Modeling, Analyzing and Visualizing Complex Networks of Co-occurrencesOuvrard, Xavier Eric;
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Self-monitoring technologies to promote healthy behavior in the long termRandriambelonoro, Mirana Michelle;

2019

Scientific Articles

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3D Modelling for Solar Erythemal UV Protection Provided by Human HairReligi, Arianna; Moccozet, Laurent;
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A Bioinformatics View of Glycan–Virus InteractionsLe Mercier, Philippe; Mariethoz, Julien; Lascano Maillard, Maria Josefina; Bonnardel, François; ... Lisacek, Frédérique
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A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational spaceClerc, Olivier; Mariethoz, Julien; Rivet, Alain; Lisacek, Frédérique; ... Ricard-Blum, Sylvie
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A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancerShen, Qiujin; Polom, Karol; Williams, Coralie; Marques Souza de Oliveira, Felipe; ... Kamali-Moghaddam, Masood
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Architecture and Evolution of Blade Assembly in β-propeller LectinsBonnardel, François; Kumar, Atul; Wimmerova, Michaela; Lahmann, Martina; ... Imberty, Anne
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Assessing complexity in cellular automata using information theoryChliamovitch, Gregor; Velasquez Reynaga, Lino Ivan; Falcone, Jean-Luc; Chopard, Bastien;
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Bridging the computational gap between mesoscopic and continuum modeling of red blood cells for fully resolved blood flowKotsalos, Christos; Latt, Jonas; Chopard, Bastien;
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Continuum model for flow diverting stents in 3D patient-specific simulation of intracranial aneurysmsLi, Sha; Chopard, Bastien; Latt, Jonas;
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Coupling of lattice Boltzmann shallow water model with lattice Boltzmann free-surface modelThorimbert, Yann; Latt, Jonas; Chopard, Bastien;
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Crowdcloud: a crowdsourced system for cloud infrastructureHosseini, Mahmood; Angelopoulos, Konstantinos Marios; Chai, Wei Koong; Kuendig, Stéphane Jean-Jacques;
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Extensive analysis of the lattice Boltzmann method on shifted stencilsHosseini, S; Coreixas, Christophe Guy; Darabiha, N.; Thévenin, D.;
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GlyConnect: Glycoproteomics Goes Visual, Interactive, and AnalyticalAlocci, Davide; Mariethoz, Julien; Gastaldello, Alessandra; Gasteiger, Elisabeth; ... Lisacek, Frédérique
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Inductive t-SNE via deep learning to visualize multi-label imagesRoman Rangel, Edgar Francisco; Marchand-Maillet, Stéphane;
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Managing Data, Information, and Technology in Cyber Physical Systems: Public Safety as a Service and its SystemsDrăgoicea, Monica; Leonard, Michel Paul; Ciolofan, Sorin N.; Militaru, Gheorghe;
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Multimodal Integration of Emotional Signals from Voice, Body, and Context: Effects of (In)Congruence on Emotion Recognition and Attitudes Towards RobotsTsiourti, Christiana; Weiss, Astrid; Wac, Katarzyna; Vincze, Markus;
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Multiscale computing for science and engineering in the era of exascale performanceHoekstra, Alfons G.; Chopard, Bastien; Coster, David; Portegies Zwart, Simon; Coveney, Peter V.
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Recognizing Induced Emotions of Movie Audiences From Multimodal InformationMuszynski, Michal; Tian, Leimin; Lai, Catherine; Moore, Johanna; ... Chanel, Guillaume
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Special Section on Multimodal Understanding of Social, Affective, and Subjective AttributesAlameda-Pineda, Xavier; Redi, Miriam; Soleymani, Mohammad; Sebe, Nicu; ... Gosling, Samuel
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Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and PathogenesisMarcelino, Isabel; Colomé-Calls, Núria; Holzmuller, Philippe; Lisacek, Frédérique; ... Vachiéry, Nathalie
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Towards a standardized bioinformatics infrastructure for N- and O-glycomicsRojas-Macias, Miguel A.; Mariethoz, Julien; Andersson, Peter; Jin, Chunsheng; ... Karlsson, Niclas G.
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UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligandsBonnardel, François; Mariethoz, Julien; Salentin, Sebastian; Robin, Xavier; ... Imberty, Anne
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Updates to the Symbol Nomenclature for Glycans guidelinesNeelamegham, Sriram; Aoki-Kinoshita, Kiyoko; Bolton, Evan; Frank, Martin; ... Woods, Robert J.

Conference Proceedings

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Hardware TOTP tokens with time synchronizationHuseynov, Emin; Seigneur, Jean-Marc;
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Proceedings of the 10th Augmented Human International Conference 2019Wolf, Katrin; Zhang, Haimo; Taiar, Redha; Seigneur, Jean-Marc;
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Your Body Reveals Your Impressions about Others: A Study on Multimodal Impression DetectionWang, Chen; Pun, Thierry; Chanel, Guillaume;

Book Chapters

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Geometric Routing Without Coordinates but MeasurementsLeone, Pierre; Samarasinghe, Kasun;
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User Incentivization in Mobile Crowdsensing SystemsAngelopoulos, Konstantinos Marios; Nikoletseas, Sotiris; Raptis, Theofanis P.; Rolim, Jose;

Proceedings Chapters

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Classification of Salsa Dance Level using Music and Interaction based Motion FeaturesSenecal, Simon; Nijdam, Niels Alexander; Magnenat Thalmann, Nadia;
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Computing flood probabilities using Twitter: application to the Houston urban area during HarveyBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Implementing a language with explicit assignment semanticsRacordon, Dimitri; Buchs, Didier;
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Indexability-Based Dataset PartitioningHoyos, Angello; Ruiz, Ubaldo; Marchand-Maillet, Stéphane; Chávez, Edgar;
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Introducing Contextual Reasoning to the Semantic Web with OWLcAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;
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Large-scale Nonlinear Variable Selection via Kernel Random FeaturesGregorova, Magda; Ramapuram, Jason Emmanuel; Kalousis, Alexandros; Marchand-Maillet, Stéphane;
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On the Benefits of Anticipating Load Imbalance for Performance Optimization of Parallel ApplicationsBoulmier, Anthony; Raynaud, Franck; Abdennadher, Nabil; Chopard, Bastien;
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Owlc: a contextual two-dimensional web ontology languageAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;
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Security and PrIvacy foR the Internet of Things: an overview of the projectAroua, S.; Champagnat, R.; Coustaty, M.; Falquet, Gilles; ... Tamani, N.

Présentations / Interventions

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Physical presence verification using TOTP and QR codesHuseynov, Emin; Seigneur, Jean-Marc;

Posters

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Agent-based models for first- and second-order emergent collective behaviors of social amoeba Dictyostelium discoideum aggregation and migration phasesParhizkar, Mohammad;

Technical Reports

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Extracting localized information from a Twitter corpus for flood preventionBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Learning by stochastic serializationsStrasser, Pablo Ramon; Armand, Stéphane; Marchand-Maillet, Stéphane; Kalousis, Alexandros;
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State-of-the-art on Current Formalisms used in Cyber-Physical Systems DevelopmentKlikovits, Stefan; Al-Ali, Rima; Amrani, Moussa; Barisic, Ankica; ... Vanherpen, Ken
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The HyperBagGraph DataEdron: An Enriched Browsing Experience of Multimedia DatasetsOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;
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Towards a Standard to Assess Blockchain & Other DLT PlatformsMaranhão, Suzana; Seigneur, Jean-Marc; Hu, Ruifeng;

Working paper

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Crowdsourced Edge: a Novel Networking Paradigm for the Collaborative CommunityKuendig, Stéphane Jean-Jacques; Rolim, Jose; Angelopoulos, Konstantinos Marios; Hosseini, Mahmood;

Doctoral Thesis

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A reference model for securing IoTMOHAMMED, Akram Adbulghani Hezam;
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Analysis and specification of scientific knowledge visualization techniquesDaponte, Vincenzo;
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Assistance à la curation de publications scientifiques par des méthodes de triage et d’annotation automatiquesMottin, Luc;
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Continuum model for flow diverting stents of intracranial aneurysmsLi, Sha;
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Enhancing wellbeing using artificial intelligence techniquesKyritsis, Athanasios;
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La traduction automatique entre langues proches: les cas du français et de l'italienRusso, Lorenza;
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Lattice Boltzmann simulations of complex flowsThorimbert, Yann;
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Program understanding, the narrative hypothesisHarth, Eric;
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Revisiting memory assignment semantics in imperative programming languagesRacordon, Dimitri;
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Un modèle sémantique basé sur les ontologies pour le partage et la réutilisabilité des itinéraires cliniques à travers le contexte (ShaRE-CP)Bediang, Georges Wylfred;

2018

Scientific Articles

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A Comparative Survey of Methods for Remote Heart Rate Detection From Frontal Face VideosWang, Chen; Pun, Thierry; Chanel, Guillaume;
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Adaptive power switching technique for ultrasonic motion sensorsHammoud, Abbass; Deriaz, Michel; Konstantas, Dimitri;
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Aesthetic Highlight Detection in Movies Based on Synchronization of Spectators’ ReactionsMuszynski, Michal; Kostoulas, Theodoros; Lombardo, Patrizia; Pun, Thierry; Chanel, Guillaume
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Alzheimer Café: an approach focused on Alzheimer’s patients but with remarkable values on the quality of life of their caregiversMerlo, Paola; Devita, Maria; Mandelli, Alessandra; Rusconi, Maria Luisa; ... Mondini, Sara
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Behavioral and Physiological Responses to Visual Interest and Appraisals: Multimodal Analysis and Automatic RecognitionSoleymani, Mohammad; Mortillaro, Marcello;
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Building a Cybernetic Model of Psychopathology: Beyond the MetaphorRudrauf, David; Debbané, Martin;
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Effet des antécédents émotionnels de contrôle et de valeur sur la résolution de problème dans un jeu vidéo collaboratifAvry, Sunny; Chanel, Guillaume; Betrancourt, Mireille; Molinari, Gaëlle;
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Extension and Contextualisation for Linked Semantic 3d GeodataMetral, Claudine; Falquet, Gilles;
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Glycomics@ExPASy: Bridging the GapMariethoz, Julien; Alocci, Davide; Gastaldello, Alessandra; Horlacher, Oliver; ... Lisacek, Frédérique
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Impact of immigrants on a multi-agent economical systemKaufmann, Léa Claire; Razakanirina, Ranaivo Mahaleo; Groen, Derek; Chopard, Bastien;
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Individuals’ stress assessment using human-smartphone interaction analysisCiman, Matteo; Wac, Katarzyna;
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Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome ProjectRobin, Thibault; Bairoch, Amos Marc; Muller, Markus Johann; Lisacek, Frédérique; Lane, Lydie
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Lattice Boltzmann simulation of dense rigid spherical particle suspensions using immersed boundary methodThorimbert, Yann; Marson, Francesco; Parmigiani, Andrea; Chopard, Bastien; Latt, Jonas
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Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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Multimodal analysis of user behavior and browsed content under different image search intentsSoleymani, Mohammad; Riegler, Michael; Halvorsen, Pål;
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Multiphase periodic pressure difference boundary condition enhanced by a proportional-integral-derivative controller for the lattice Boltzmann methodLeclaire, Sébastien; Latt, Jonas; Vidal, David; Bertrand, François;
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Multiscale modeling: recent progress and open questionsChopard, Bastien; Falcone, Jean-Luc; Kuenzli, Pierre; Veen, Lourens; Hoekstra, Alfons
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On Adjacency and e-Adjacency in General Hypergraphs: Towards a New e-Adjacency TensorOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;
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Parameter Estimation of Platelets Deposition: Approximate Bayesian Computation With High Performance ComputingDutta, Ritabrata; Chopard, Bastien; Latt, Jonas; Dubois, Frank; ... Mira, Antonietta
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Rendezvous search with markers that can be dropped at chosen timesLeone, Pierre; Alpern, Steve;
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Semantic languages for developing correct language translationsBarroca, Bruno; Amaral, Vasco; Buchs, Didier;
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Sharing Emotions Impacts Computer-Supported Collaborative Processes: Effect of an Emotion Awareness ToolAvry, Sunny; Molinari, Gaëlle;
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SugarSketcher: Quick and Intuitive Online Glycan DrawingAlocci, Davide; Suchánková, Pavla; Costa, Renaud; Hory, Nicolas; ... Lisacek, Frédérique
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The application of the screen-model based approach for stents in cerebral aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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The probability of external causation: an empirical account of crosslinguistic variation in lexical causativesSamardžić, Tanja; Merlo, Paola;
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Time-scaled interactive object-driven multi-party VRJain, Nisha; Wydra, Andrzej; Hai, Wen; Magnenat Thalmann, Nadia; Thalmann, Daniel
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Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopesAlocci, Davide; Ghraichy, Marie; Barletta, Elena; Gastaldello, Alessandra; ... Lisacek, Frédérique

Books

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Proceedings of the 9th Augmented Human International ConferenceSeigneur, Jean-Marc; Kim, Gerard Jounghyun; Woo, Woontack; Eune, Juhyun;

Conference Proceedings

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Modelled Testbeds: Visualizing and Augmenting Physical Testbeds with Virtual ResourcesKuendig, Stéphane Jean-Jacques; Angelopoulos, Konstantinos Marios; Rolim, Jose;

Book Chapters

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Automatic annotation of French medical narratives with SNOMED CT conceptsGaudet-Blavignac, Christophe; Foufi, Vasiliki; Wehrli, Eric; Lovis, Christian;

Proceedings Chapters

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A Model Checker Collection for the Model Checking Contest Using Docker and Machine LearningBuchs, Didier; Klikovits, Stefan; Linard, Alban; Mencattini, Romain; Racordon, Dimitri
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A practical implementation of contextual reasoning on the semantic webAljalbout, Sahar; Falquet, Gilles; Buchs, Didier;
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A practical type system for safe aliasingRacordon, Dimitri; Buchs, Didier;
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A survey on trust in augmented human technologiesSeigneur, Jean-Marc; Ahram, Tareq; Taiar, Redha;
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An Abstract Specification Technique for the Publication of Linked Geospatial DataFalquet, Gilles; Metral, Claudine; Ozainne, Sylvain; Giuliani, Gregory;
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