Institut de génétique et de génomique

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2020

Scientific Articles

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ATLAS: a snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence dataKieser, Silas; Brown, Joseph; Zdobnov, Evgeny; Trajkovski, Mirko; McCue, Lee Ann
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Circadian clocks make metabolism runSinturel, Flore; Petrenko, Volodymyr; Dibner, Charna;
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Cryptochrome-mediated blue-light signalling modulates UVR8 photoreceptor activity and contributes to UV-B tolerance in ArabidopsisTissot, Nicolas; Ulm, Roman;
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Degradation of the transcription factors PIF4 and PIF5 under UV-B promotes UVR8-mediated inhibition of hypocotyl growth in ArabidopsisTavridou, Eleni; Pireyre, Marie; Ulm, Roman;
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Fibrin(ogen) in human disease: both friend and foeFerreira Vilar Da Silva, Rui Filipe; Fish, Richard; Casini, Alessandro; Neerman Arbez, Marguerite;
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FKBP10 regulates protein translation to sustain lung cancer growthRamadori, Giorgio; Ioris, Rafael M; Villanyi, Zoltan; Firnkes, Raquel; ... Coppari, Roberto
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Identification and expression of a novel heterozygous frameshift mutation in FGA accounting for congenital hypofibrinogenemia in carriers of severe hemophilia A.Ferreira Vilar Da Silva, Rui Filipe; Casini, Alessandro; Fournel, Alexandra; Mourey, Guillaume; Neerman Arbez, Marguerite
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In pancreatic islets from type 2 diabetes patients, the dampened circadian oscillators lead to reduced insulin and glucagon exocytosisPetrenko, Volodymyr; Gandasi, Nikhil R; Sage, Daniel; Tengholm, Anders; ... Dibner, Charna
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Influence of Paleolithic range contraction, admixture and long‐distance dispersal on genetic gradients of modern humans in AsiaBranco, Catarina; Ray, Nicolas; Currat, Mathias; Arenas, Miguel;
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Integrative and quantitative view of the CtrA regulatory network in a stalked budding bacteriumLeicht, Oliver; van Teeseling, Muriel C F; Panis, Gaël; Reif, Celine; ... Thanbichler, Martin
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Loss of bacterial cell pole stabilization in caulobacter crescentus sensitizes to outer membrane stress and peptidoglycan-directed antibioticsVallet, Simon; Hansen, Lykke Haastrup; Bistrup, Freja Cecillie; Laursen, Signe Aagaard; ... Kirkpatrick, Clare
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Optimized low‐dose combinatorial drug treatment boosts selectivity and efficacy of colorectal carcinoma treatmentZoetemelk, Marloes; Ramzy, George Mourad; Rausch, Magdalena; Kossler, Thibaud; ... Nowak-Sliwinska, Patrycja
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Safety of the Geneva Cocktail, a Cytochrome P450 and P-Glycoprotein Phenotyping Cocktail, in Healthy Volunteers from Three Different Geographic OriginsRollason, Victoria; Mouterde, Médéric; Daali, Youssef; Čížková, Martina; ... Desmeules, Jules Alexandre
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Taurine treatment of retinal degeneration and cardiomyopathy in a consanguineous family with SLC6A6 taurine transporter deficiencyAnsar, Muhammad; Ranza, Emmanuelle Nathalie; Shetty, Madhur; Paracha, Sohail A; ... Antonarakis, Stylianos
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The GLP-1R agonist liraglutide limits hepatic lipotoxicity and inflammatory response in mice fed a methionine-choline deficient dietSomm, Emmanuel; Montandon, Sophie Anne; Loizides-Mangold, Ursula Elfriede; Gaia, Nadia; ... Jornayvaz, François
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UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in ArabidopsisTavridou, Eleni; Schmid-Siegert, Emanuel; Fankhauser, Christian; Ulm, Roman;

2019

Scientific Articles

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A spoIID homolog cleaves glycan strands at the chlamydial division septumJacquier, Nicolas; Yadav, Akhilesh K; Pillonel, Trestan; Viollier, Patrick; ... Greub, Gilbert Daniel
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Cellular circadian period length inversely correlates with HbA1c levels in individuals with type 2 diabetesSinturel, Flore; Makhlouf, Anne-Marie; Meyer, Patrick; Tran, Christel; ... Dibner, Charna
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Chromatin topology in development and diseaseBompadre, Olimpia; Andrey, Guillaume;
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Detection of dicistroviruses RNA in blood of febrile Tanzanian childrenCordey, Samuel; Laubscher, Florian; Hartley, Mary-Anne; Junier, Thomas; ... Kaiser, Laurent
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Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell TranscriptomicsStevant, Isabelle; Kuhne, Françoise; Greenfield, Andy; Chaboissier, Marie-Christine; ... Nef, Serge
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Expression of the DNA-binding factor TOX promotes the encephalitogenic potential of microbe-induced autoreactive CD8+ T cellsPage, Nicolas; Klimek, Bogna; De Roo, Mathias; Steinbach, Karin; ... Merkler, Doron
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Genetic Control of Gonadal Sex Determination and DevelopmentStevant, Isabelle; Nef, Serge;
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High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantationBuhler, Stéphane; Baldomero, Helen; Ferrari-Lacraz, Sylvie; Nunes, Jose Manuel; ... Villard, Jean
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Hybridization and introgression during density-dependent range expansion: European wildcats as a case studyQuilodran, Claudio; Nussberger, Beatrice; Montoya Burgos, Juan Ignacio; Currat, Mathias;
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Identification of new DNA-associated proteins from Waddlia chondrophilaBarsy, Marie de; Herrgott, Lucas; Martin, Virginie; Pillonel, Trestan; ... Greub, Gilbert
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Loss of neurogenesis in aging HydraTomczyk, Szymon; Buzgariu, Wanda Christa; Perruchoud, Chrystelle; Fisher, Kathleen; ... Galliot, Brigitte
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Microbiota guides insulin trafficking in beta cellsStojanovic, Ozren; Trajkovski, Mirko;
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Multi-technique comparison of atherogenic and MCD NASH models highlights changes in sphingolipid metabolismMontandon, Sophie; Somm, Emmanuel; Loizides-Mangold, Ursula; De Vito, Claudio; ... Jornayvaz, François
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Technology for the prevention of antimicrobial resistance and healthcare-associated infections; 2017 Geneva IPC-Think Tank (Part 2)Zingg, Walter; Park, Benjamin J.; Storr, Julie; Ahmad, Raheelah; ... Ndoye, Babacar
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The importance of being rhythmic: living in harmony with your body clocksDibner, Charna;
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Validation of molecular biomarkers for preoperative diagnostics of human papillary thyroid carcinoma in fine needle aspiratesSadowski Veuthey, Mercedes Samira Doris; Petrenko, Volodymyr; Meyer, Patrick; Pusztaszeri, Marc; ... Dibner, Charna
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Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system diseaseSchibler, Manuel; Brito, Francisco; Zanella, Marie-Céline; Zdobnov, Evgeny; ... Kaiser, Laurent

2018

Scientific Articles

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Age-dependent changes in mean and variance of gene expression across tissues in a twin cohortVinuela Rodriguez, Ana; Brown, Andrew Anand; Buil Demur, Alfonso Alberto; Tsai, Pei-Chien; ... Small, Kerrin S
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Angiogenin and osteoprotegerin are type II muscle specific myokines protecting pancreatic beta-cells against proinflammatory cytokinesRutti Roch, Sabine; Dusaulcy, Rodolphe; Hansen, Jakob S.; Howald, Cédric; ... Bouzakri, Karim
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Arabidopsis RUP2 represses UVR8-mediated flowering in noninductive photoperiodsArongaus, Adriana Beatriz; Chen, Song; Pireyre, Marie; Glöckner, Nina; ... Ulm, Roman
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Biallelic variants in LINGO1 are associated with autosomal recessive intellectual disability, microcephaly, speech and motor delayAnsar, Muhammad; Riazuddin, Saima; Sarwar, Muhammad Tahir; Makrythanasis, Periklis; ... Antonarakis, Stylianos
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Body clocks: Time for the Nobel PrizeDibner, Charna; Schibler, Ulrich;
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Common traits between the beige fat-inducing stimuliStojanovic, Ozren; Kieser, Silas; Trajkovski, Mirko;
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Comprehensive evaluation of coding region point mutations in microsatellite‐unstable colorectal cancerKondelin, Johanna; Salokas, Kari; Saarinen, Lilli; Ovaska, Kristian; ... Aaltonen, Lauri A
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Coping with 'Dark Sides of the Sun' through Photoreceptor SignalingDemarsy, Emilie; Goldschmidt-Clermont, Michel P.; Ulm, Roman;
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Deciphering the fine nucleotide diversity of full HLA class I and class II genes in a well-documented population from sub-Saharan AfricaGoeury, Thomas; Creary, L E; Brunet, Lydie; Galan, M; ... Sanchez-Mazas, Alicia
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Effect of hybridization with genome exclusion on extinction riskQuilodran, Claudio; Currat, Mathias; Montoya Burgos, Juan Ignacio;
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Expression of the DNA-binding factor TOX promotes the encephalitogenic potential of microbe-induced autoreactive CD8+ T cellsPage, Nicolas; Klimek, Bogna; De Roo, Mathias; Steinbach, Karin; ... Merkler, Doron
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Mandenka from Senegal: Next Generation Sequencing typings reveal very high frequencies of particular HLA class II alleles and haplotypesGoeury, Thomas; Creary, L E; Fernandez-Vina, M A; Tiercy, Jean-Marie; ... Sanchez-Mazas, Alicia
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MRPL53, a new candidate gene for orofacial clefting, identified using an eQTL approachMasotti, C.; Brito, L.A.; Nica, A.C.; Ludwig, K.U.; ... Passos-Bueno, M.R.
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Photoreceptor-mediated regulation of the COP1/SPA E3 ubiquitin ligasePodolec, Roman; Ulm, Roman;
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Regulation of Cellular Metabolism through Phase Separation of EnzymesProuteau, Manoel; Loewith, Robbie Joséph;
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Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal musclePerrin, Laurent; Loizides-Mangold, Ursula; Chanon, Stéphanie; Gobet, Cédric; ... Dibner, Charna
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Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variationGamazon, Eric R.; Segrè, Ayellet V.; van de Bunt, Martijn; Wen, Xiaoquan; ... Ardlie, Kristin G.

Professional Articles

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The Candidate Schizophrenia Risk Gene DGCR2 Regulates Early Steps of CorticogenesisMolinard-Chenu, Aude; Dayer, Alexandre;

2017

Scientific Articles

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A pathway of targeted autophagy is induced by DNA damage in budding yeastEapen, Vinay V; Waterman, David P; Bernard, Amélie; Schiffmann, Nathan; ... Haber, James E
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Common and well-documented HLA alleles over all of Europe and within European sub-regions: A catalogue from the European Federation for ImmunogeneticsSanchez-Mazas, Alicia; Nunes, Jose Manuel; Middleton, D; Sauter, J; ... Fleischhauer, K
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Cryo-EM structure of Saccharomyces cerevisiae target of rapamycin complex 2Karuppasamy, Manikandan; Kusmider, Beata; Oliveira, Taiana M; Gaubitz, Christl; ... Schaffitzel, Christiane
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How plants cope with UV-B: from perception to responseYin, Ruohe; Ulm, Roman;
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Reciprocal Regulation of Target of Rapamycin Complex 1 and Potassium AccumulationPrimo, Cecilia; Ferri-Blázquez, Alba; Loewith, Robbie Joséph; Yenush, Lynne;
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The HLA-A, -B and -DRB1 polymorphism in a large dataset of South Brazil bone marrow donors from Rio Grande do SulBoquett, J A; Nunes, Jose Manuel; Buhler, Stéphane; de Oliveira, M Z; ... Sanchez-Mazas, Alicia
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The HLA-B landscape of Africa: Signatures of pathogen-driven selection and molecular identification of candidate alleles to malaria protectionSanchez-Mazas, Alicia; Černý, Viktor; Di, Da; Buhler, Stéphane; ... Nunes, Jose Manuel
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TORC1 organized in inhibited domains (TOROIDs) regulate TORC1 activityProuteau, Manoel; Desfosses, Ambroise; Sieben, Christian; Bourgoint, Clelia; ... Loewith, Robbie Joséph

2016

Scientific Articles

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A Signaling Lipid Associated with Alzheimer's Disease Promotes Mitochondrial DysfunctionKennedy, Michael A; Moffat, Tia C; Gable, Kenneth; Ganesan, Suriakarthiga; ... Baetz, Kristin
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COP1 is required for UV-B-induced nuclear accumulation of the UVR8 photoreceptorYin, Ruohe; Skvortsova, Mariya; Loubery, Sylvain Philippe; Ulm, Roman;
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Dual action antifungal small molecule modulates multidrug efflux and TOR signalingShekhar-Guturja, Tanvi; Gunaherath, G M Kamal B; Wijeratne, E M Kithsiri; Lambert, Jean-Philippe; ... Cowen, Leah E
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Early markers for myocardial ischemia and sudden cardiac deathSabatasso, Sara; Mangin, Patrice; Fracasso, Tony; Moretti, Milena; ... Djonov, Valentin
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Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinomaBonilla Bustillo, Ximena; Parmentier, Laurent; King, Bryan; Bezrukov, Fedor; ... Nikolaev, Sergey Igorievich
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Mapping the HLA diversity of the Iberian PeninsulaRomòn, Iñigo; Montes, Carmen; Ligeiro, Dario; Trindade, Hélder; ... Buhler, Stéphane
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Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8Binkert, Melanie; Crocco, Carlos; Ekundayo, Babatunde; Lau, Kelvin; ... Ulm, Roman
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TOR Complexes and the Maintenance of Cellular HomeostasisEltschinger, Sandra; Loewith, Robbie Joséph;
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TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiaeYerlikaya, Seda; Meusburger, Madeleine; Kumari, Romika; Huber, Alexandre; ... Loewith, Robbie Joséph
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TORC2 Structure and FunctionGaubitz, Christl; Prouteau, Manoel; Kusmider, Beata; Loewith, Robbie Joséph;
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UV-B Perception and Acclimation in Chlamydomonas reinhardtiiTilbrook, Kimberley; Dubois-Barthelemy, Marine; Crocco, Carlos; Yin, Ruohe; ... Ulm, Roman
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UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtiiAllorent, Guillaume; Legendre Lefebvre, Linnka; Chappuis, Richard; Kuntz, Marcel; ... Goldschmidt-Clermont, Michel P.
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