Centre interfacultaire de neurosciences

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2022

Scientific Articles

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Brain MR images segmentation using 3D CNN with features recalibration mechanism for segmented CT generationMecheter, Imene; Abbod, Maysam; Zaidi, Habib; Amira, Abbes;
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Brain reactivity to emotion persists in NREM sleep and is associated with individual dream recallMoyne, Maeva; Legendre, Guillaume Yann Théodore; Arnal, Luc; Kumar, Samika; ... Dominguez Borras, Judith
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COLI-Net: Deep learning-assisted fully automated COVID-19 lung and infection pneumonia lesion detection and segmentation from chest computed tomography imagesShiri Lord, Isaac; Arabi, Hossein; Salimi, Yazdan; Sanaat, Amirhossein; ... Zaidi, Habib
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COVID-19 prognostic modeling using CT radiomic features and machine learning algorithms: Analysis of a multi-institutional dataset of 14,339 patientsShiri Lord, Isaac; Salimi, Yazdan; Pakbin, Masoumeh; Hajianfar, Ghasem; ... Zaidi, Habib
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Decentralized Distributed Multi-institutional PET Image Segmentation Using a Federated Deep Learning FrameworkShiri Lord, Isaac; Vafaei Sadr, Alireza; Amini, Mehdi; Salimi, Yazdan; ... Zaidi, Habib
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Deep learning-based denoising of low-dose SPECT myocardial perfusion images: quantitative assessment and clinical performanceAghakhan Olia, Narges; Kamali-Asl, Alireza; Hariri Tabrizi, Sanaz; Geramifar, Parham; ... Zaidi, Habib
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Deep learning-guided attenuation correction in the image domain for myocardial perfusion SPECT imagingMostafapour, Samaneh; Gholamiankhah, Faeze; Maroufpour, Sirwan; Momennezhad, Mehdi; ... Zaidi, Habib
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MRI‐guided attenuation correction in torso PET/MRI: Assessment of segmentation‐, atlas‐, and deep learning‐based approaches in the presence of outliersArabi, Hossein; Zaidi, Habib;
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Overall survival prognostic modelling of non-small cell lung cancer patients using positron emission tomography/computed tomography harmonised radiomics features: the quest for the optimal machine learning algorithmAmini, Mehdi; Hajianfar, Ghasem; Hadadi Avval, Atlas; Nazari, Mostafa; ... Zaidi, Habib
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Preferential Involvement of BRCA1/BARD1, Not Tip60/Fe65, in DNA Double-Strand Break Repair in Presenilin-1 P117L Alzheimer ModelsMaciel Authiat, Marcella; Gruz-Gibelli, Emmanuelle; Colas, Julien; Bianchi, Estelle; ... Savioz, Armand
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Robust-Deep: A Method for Increasing Brain Imaging Datasets to Improve Deep Learning Models' Performance and RobustnessSanaat, Amirhossein; Shiri Lord, Isaac; Ferdowsi, Sohrab; Arabi, Hossein; Zaidi, Habib
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Unsupervised pseudo CT generation using heterogenous multicentric CT/MR images and CycleGAN: Dosimetric assessment for 3D conformal radiotherapyJabbarpour, Amir; Mahdavi, Seied Rabi; Vafaei Sadr, Alireza; Esmaili, Golbarg; ... Zaidi, Habib

2021

Scientific Articles

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A single session of moderate intensity exercise influences memory, endocannabinoids and brain derived neurotrophic factor levels in menMarin Bosch, Blanca; Bringard, Aurélien; Logrieco, Maria Grazia Mada; Lauer, Estelle; ... Igloi, Kinga Katinka
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Artificial intelligence-driven assessment of radiological images for COVID-19Bouchareb, Yassine; Moradi Khaniabadi, Pegah; Al Kindi, Faiza; Al Dhuhli, Humoud; ... Rahmim, Arman
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Assessment of deep learning-based PET attenuation correction frameworks in the sinogram domainArabi, Hossein; Zaidi, Habib;
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Automatic fetal biometry prediction using a novel deep convolutional network architectureGhelich Oghli, Mostafa; Shabanzadeh, Ali; Moradi, Shakiba; Sirjani, Nasim; ... Zaidi, Habib
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Cardiac SPECT radiomic features repeatability and reproducibility: A multi-scanner phantom studyEdalat-Javid, Mohammad; Shiri Lord, Isaac; Hajianfar, Ghasem; Abdollahi, Hamid; ... Zaidi, Habib
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Comparison of the X-ray tube spectrum measurement using BGO, NaI, LYSO, and HPGe detectors in a preclinical mini-CT scanner: Monte Carlo simulation and practical experimentLohrabian, Vahid; Kamali-Asl, Alireza; Harvani, Hossein Ghadiri; Hosseini Aghdam, Seyed Rashid; ... Zaidi, Habib
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Deep learning-based Auto-segmentation of Organs at Risk in High-Dose Rate Brachytherapy of Cervical CancerMohammadi, Reza; Shokatian, Iman; Salehi, Mohammad; Arabi, Hossein; ... Zaidi, Habib
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Deep learning-based fully automated Z-axis coverage range definition from scout scans to eliminate overscanning in chest CT imagingSalimi, Yazdan; Shiri Lord, Isaac; Akhavanallaf, Azadeh; Mansouri, Zahra; ... Zaidi, Habib
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DeepTOFSino: A deep learning model for synthesizing full-dose time-of-flight bin sinograms from their corresponding low-dose sinogramsSanaat, Amirhossein; Shooli, Hossein; Ferdowsi, Sohrab; Shiri Lord, Isaac; ... Zaidi, Habib
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Evidence accumulation relates to perceptual consciousness and monitoringPereira Sala, Michaël; Megevand, Pierre Bastien; Tan, Mixue; Chang, Wenwen; ... Faivre, Nathan
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Fast dynamic brain PET imaging using stochastic variational prediction for recurrent frame generationSanaat, Amirhossein; Mirsadeghi, Ehsan; Razeghi, Behrooz; Ginovart, Nathalie; Zaidi, Habib
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Feasibility of Deep Learning-Guided Attenuation and Scatter Correction of Whole-Body 68Ga-PSMA PET Studies in the Image DomainMostafapour, Samaneh; Gholamiankhah, Faeze; Dadgar, Habibollah; Arabi, Hossein; Zaidi, Habib
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Fully Automated Gross Tumor Volume Delineation From PET in Head and Neck Cancer Using Deep Learning AlgorithmsShiri Lord, Isaac; Arabi, Hossein; Sanaat, Amirhossein; Jenabi, Elnaz; ... Zaidi, Habib
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Leveraging deep neural networks to improve numerical and perceptual image quality in low-dose preclinical PET imagingAmirrashedi, Mahsa; Sarkar, Saeed; Mamizadeh, Hojjat; Ghadiri, Hossein; ... Ay, Mohammad Reza
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Machine Learning-based Prognostic Modeling using Clinical Data and Quantitative Radiomic Features from Chest CT Images in COVID-19 PatientsShiri Lord, Isaac; Sorouri, Majid; Geramifar, Parham; Nazari, Mostafa; ... Zaidi, Habib
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Non-Small Cell Lung Carcinoma Histopathological Subtype Phenotyping using High-Dimensional Multinomial Multiclass CT Radiomics SignatureKhodabakhshi, Zahra; Mostafaei, Shayan; Arabi, Hossein; Oveisi, Mehrdad; ... Zaidi, Habib
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Overall Survival Prediction in Renal Cell Carcinoma Patients Using Computed Tomography Radiomic and Clinical InformationKhodabakhshi, Zahra; Amini, Mehdi; Mostafaei, Shayan; Haddadi Avval, Atlas; ... Zaidi, Habib
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Personalized brachytherapy dose reconstruction using deep learningAkhavanallaf, Azadeh; Mohammadi, Reza; Shiri Lord, Isaac; Salimi, Yazdan; ... Zaidi, Habib
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PET/CT-Based Salvage Radiotherapy for Recurrent Prostate Cancer After Radical Prostatectomy: Impact on Treatment Management and Future DirectionsLe Guevelou, Jennifer; Achard, Verane; Mainta, Ismini Charis; Zaidi, Habib; ... Zilli, Thomas
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Quantitative Molecular Positron Emission Tomography Imaging Using Advanced Deep Learning TechniquesZaidi, Habib; El Naqa, Issam;
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Resting-State Phase-Amplitude Coupling Between the Human Subthalamic Nucleus and Cortical Activity: A Simultaneous Intracranial and Scalp EEG StudyDamborska, Alena; Lamoš, Martin; Brunet, Denis; Vulliemoz, Serge; ... Rektor, Ivan
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Standard SPECT myocardial perfusion estimation from half-time acquisitions using deep convolutional residual neural networksShiri Lord, Isaac; AmirMozafari Sabet, Kiarash; Arabi, Hossein; Pourkeshavarz, Mozhgan; ... Zaidi, Habib
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Suppressing the morning cortisol rise after memory reactivation at 4 a.m. enhances episodic memory reconsolidation in humansAntypa, Argyro-Despoina; Perrault, Aurore; Vuilleumier, Patrik; Schwartz, Sophie; Rimmele, Ulrike
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Treatment Response Prediction using MRI-based Pre-, Post- and Delta-Radiomic Features and Machine Learning Algorithms in Colorectal CancerShayesteh, Sajad P; Nazari, Mostafa; Salahshour, Ali; Sandoughdaran, Saleh; ... Zaidi, Habib
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Ultra-low-dose chest CT imaging of COVID-19 patients using a deep residual neural networkShiri Lord, Isaac; Akhavanallaf, Azadeh; Sanaat, Amirhossein; Salimi, Yazdan; ... Zaidi, Habib
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Whole-body voxel-based internal dosimetry using deep learningAkhavanallaf, Azadeh; Shiri Lord, Isaac; Arabi, Hossein; Zaidi, Habib;

Proceedings Chapters

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Deep Learning-based Automated Delineation of Head and Neck Malignant Lesions from PET ImagesArabi, Hossein; Shiri Lord, Isaac; Jenabi, Elnaz; Becker, Minerva; Zaidi, Habib

Masters

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Comparing the effects of viewing the future of climate change in high-immersion and low-immersion technologies on ecological beliefsElbassiouny, Mai Hisham Sirry;

2020

Scientific Articles

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A new deep convolutional neural network design with efficient learning capability: Application to CT image synthesis from MRI.Bahrami, Abass; Karimian, Alireza; Fatemizadeh, Emad; Arabi, Hossein; Zaidi, Habib
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A theranostic approach based on radiolabeled antiviral drugs, antibodies and CRISPR-associated proteins for early detection and treatment of SARS-CoV-2 diseaseShiri Lord, Isaac; Abdollahi, Hamid; Atashzar, Mohammad Reza; Rahmim, Arman; Zaidi, Habib
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Advances in Preclinical PET InstrumentationAmirrashedi, Mahsa; Zaidi, Habib; Ay, Mohammad Reza;
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Age-dependent dose calculations for common PET radionuclides and brain radiotracers in nonhuman primate computational modelsXie, Tianwu; Chen, Xin; Zaidi, Habib;
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Applications of artificial intelligence and deep learning in molecular imaging and radiotherapyArabi, Hossein; Zaidi, Habib;
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Assessment of Lesion Detectability in Dynamic Whole-Body PET Imaging Using Compartmental and Patlak Parametric MappingZaker, Neda; Kotasidis, Fotis; Garibotto, Valentina; Zaidi, Habib;
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Deep learning-guided estimation of attenuation correction factors from time-of-flight PET emission dataArabi, Hossein; Zaidi, Habib;
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Deep learning‐guided joint attenuation and scatter correction in multitracer neuroimaging studiesArabi, Hossein; Bortolin, Karin; Ginovart, Nathalie; Garibotto, Valentina; Zaidi, Habib
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Deep-JASC: joint attenuation and scatter correction in whole-body 18F-FDG PET using a deep residual networkShiri Lord, Isaac; Arabi, Hossein; Geramifar, Parham; Hajianfar, Ghasem; ... Zaidi, Habib
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Deficits in cognitive and affective theory of mind relate to dissociated lesion patterns in prefrontal and insular cortexCorradi Dell'Acqua, Corrado; Ronchi, Roberta; Thomasson, Marine; Bernati, Thérèse; ... Vuilleumier, Patrik
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Depth of Interaction Estimation in a Preclinical PET Scanner Equipped with Monolithic Crystals Coupled to SiPMs Using a Deep Neural NetworkSanaat, Amirhossein; Zaidi, Habib;
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Development of a nonhuman primate computational phantom for radiation dosimetryXie, Tianwu; Park, Jin Seo; Zhuo, Weihai; Zaidi, Habib;
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Does inappropriate behavior hurt or stink ? The interplay between neural representations of somatic experiences and moral decisionsSharvit, Gil Shlomo; Lin, Enru; Vuilleumier, Patrik; Corradi Dell'Acqua, Corrado;
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Effect of acute physical exercise on motor sequence memoryMarin Bosch, Blanca; Bringard, Aurélien; Logrieco, Maria Grazia Mada; Lauer, Estelle; ... Igloi, Kinga Katinka
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Human discrimination and categorization of emotions in voices: a functional near-infrared spectroscopy (fNIRS) studyGruber, Thibaud; Debracque, Coralie; Ceravolo, Léonardo; Igloi, Kinga Katinka; ... Grandjean, Didier Maurice
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Interplay between midbrain and dorsal anterior cingulate regions arbitrates lingering reward effects on memory encodingAberg, Carl Kristoffer; Kramer, Emily; Schwartz, Sophie;
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Neural oscillations in human auditory cortex revealed by fast fMRI during auditory perceptionFruehholz, Sascha; Trost, Wiebke; Grandjean, Didier Maurice; Belin, Pascal;
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Neurocomputational correlates of learned irrelevance in humansAberg, Carl Kristoffer; Kramer, Emily; Schwartz, Sophie;
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Neuroprotection Against Amyloid-b Induced DNA Double-Strand Breaks is Mediated by Multiple Retinoic Acid-Dependent PathwaysColas, Julien; Chessel, Natacha; Ouared, Ahmed Allaeddine; Gruz-Gibelli Da Mouta, Emmanuelle; ... Savioz, Armand
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Next-Generation Radiogenomics Sequencing for Prediction of EGFR and KRAS Mutation Status in NSCLC Patients Using Multimodal Imaging and Machine Learning AlgorithmsShiri Lord, Isaac; Maleki, Hasan; Hajianfar, Ghasem; Abdollahi, Hamid; ... Rahmim, Arman
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Noninvasive Fuhrman grading of clear cell renal cell carcinoma using computed tomography radiomic features and machine learningNazari, Mostafa; Shiri Lord, Isaac; Hajianfar, Ghasem; Oveisi, Niki; ... Zaidi, Habib
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Observation and assessment of acoustic contamination of electrophysiological brain signals during speech production and sound perceptionRoussel, Philémon; Godais, Gaël Le; Bocquelet, Florent; Palma, Marie; ... Yvert, Blaise
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Projection-space implementation of deep learning-guided low-dose brain PET imaging improves performance over implementation in image-spaceSanaat, Amirhossein; Arabi, Hossein; Mainta, Ismini Charis; Garibotto, Valentina; Zaidi, Habib
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Repeatability of radiomic features in magnetic resonance imaging of glioblastoma: test-retest and image registration analysesShiri Lord, Isaac; Hajianfar, Ghasem; Sohrabi, Ahmad; Abdollahi, Hamid; ... Rahmim, Arman
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Resting-State Brain Activity for Early Prediction Outcome in Postanoxic Patients in a Coma with Indeterminate Clinical PrognosisPugin, Deborah; Hofmeister, Jérémy; Gasche, Yvan; Vulliemoz, Serge; ... Haller, Sven
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Spatially guided nonlocal mean approach for denoising of PET imagesArabi, Hossein; Zaidi, Habib;
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Towards quantitative small-animal imaging on hybrid PET/CT and PET/MRI systemsAmirrashedi, Mahsa; Zaidi, Habib; Ay, Mohammad Reza;
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Truncation compensation and metallic dental implant artefact reduction in PET/MRI attenuation correction using deep learning-based object completionArabi, Hossein; Zaidi, Habib;
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