Département d'informatique

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2020

Scientific Articles

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Achievement appraisals, emotions and socio-cognitive processes: how they interplay in collaborative problem-solving?Avry, Sunny; Chanel, Guillaume; Betrancourt, Mireille; Molinari, Gaëlle;
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Buckling of an Epithelium Growing under Spherical ConfinementTrushko, Anastasiya; Di Meglio, Ilaria Francesca; Merzouki, Fatma Aziza; Blanch Mercader, Carles; ... Roux, Aurélien
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CLASTR : the cellosaurus STR similarity search tool ‐ A precious help for cell line authenticationRobin, Thibault; Capes‐Davis, Amanda; Bairoch, Amos Marc;
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Complementing human behavior assessment by leveraging personal ubiquitous devices and social links: an evaluation of the peer-ceived momentary assessment methodBerrocal Rojas, Allan Francisco; Concepcion, Waldo; De Dominicis, Stefano; Wac, Katarzyna;
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First-order agent-based models of emergent behaviour of Dictyostelium discoideum and their inspiration for swarm roboticsParhizkar, Mohammad; Di Marzo Serugendo, Giovanna; Nitschke, Jahn; Hellequin, Louis; ... Soldati, Thierry
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Impact of Visual and Sound Orchestration on physiological arousal and tension in a horror gameGraja, Sarra; LOPES, Phil; Chanel, Guillaume;
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mQoL Lab: Step-by-Step Creation of a Flexible Platform to Conduct Studies Using Interactive, Mobile, Wearable and Ubiquitous DevicesBerrocal Rojas, Allan Francisco; Manea, Vlad; De Masi, Alexandre; Wac, Katarzyna;
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Norine: Update of the Nonribosomal Peptide ResourceFlissi, Areski; Ricart Altimiras, Emma; Campart, Clémentine; Chevalier, Mickael; ... Pupin, Maude
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Peers know you: a feasibility study of the predictive value of peer's observations to estimate human statesBerrocal Rojas, Allan Francisco; Wac, Katarzyna;
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Second-order agent-based models of emergent behaviour of Dictyostelium discoideum and their inspiration for swarm roboticsParhizkar, Mohammad; Di Marzo Serugendo, Giovanna; Nitschke, Jahn; Hellequin, Louis; ... Soldati, Thierry
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Sharing Emotions Contributes to Regulating Collaborative Intentions in Group Problem-SolvingAvry, Sunny; Molinari, Gaëlle; Betrancourt, Mireille; Chanel, Guillaume;
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Structure and engineering of tandem repeat lectinsNotova, Simona; Bonnardel, François; Lisacek, Frédérique; Varrot, Annabelle; Imberty, Anne
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Variational Information Bottleneck for Semi-Supervised ClassificationVoloshynovskyy, Svyatoslav; Taran, Olga; Kondah, Mouad; Holotyak, Taras; Rezende, Danilo

Conference Proceedings

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A Formalism to Model Higher-Order FunctionMorard, Damien;
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An Annotation System for Specifying Aliasing Invariants on Object Fields. Proceedings of the 4th International Conference on the Art, Science and Engineering of ProgrammingCoet, Aurélien;
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Functional Block Programming and DebuggingRacordon, Dimitri; emmastac, Emmanouela; Morard, Damien; Buchs, Didier;

Book Chapters

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Structural Database for Lectins and the UniLectin Web PlatformBonnardel, François; Perez, Serge; Lisacek, Frédérique; Imberty, Anne;

Proceedings Chapters

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Adversarial Detection of Counterfeited Printable Graphical Codes: Towards "Adversarial Games" In Physical WorldTaran, Olga; Bonev, Slavtcho Metodiev; Holotyak, Taras; Voloshynovskyy, Svyatoslav;
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Featherweight Swift: A Core Calculus for Swift’s Type SystemRacordon, Dimitri; Buchs, Didier;
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Impression detection and management using an embodied conversational agentWang, Chen; Biancardi, Beatrice; Mancini, Maurizio; Cafaro, Angelo; ... Chanel, Guillaume
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Privacy-Preserving Image Sharing Via Sparsifying Layers on Convolutional GroupsFerdowsi, Sohrab; Razeghi, Behrooz; Holotyak, Taras; Calmon, Flavio P.; Voloshynovskyy, Svyatoslav
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User evaluation of affective dynamic difficulty adjustment based on physiological deep learningChanel, Guillaume; Lopes, Phil;

Présentations / Interventions

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Remote Multi-Player Synchronization using the Labstreaming Layer SystemFanourakis, Marios Aristogenis; Lopes, Phil; Chanel, Guillaume;

Working paper

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A Formal Definition of Swift's Value SemanticsRacordon, Dimitri;

Doctoral Thesis

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Benchmarking in (meta-) genomics: LEMMI & BUSCOSeppey, Mathieu;
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Development of Bioinformatics Tools and Workflows for Liquid Chromatography-Mass Spectrometry (LC-MS)MetabolomicsStricker, Thomas;
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Development of Bioinformatics Tools and Workflows for the Analysis of Cell Line DataRobin, Thibault;
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Development of Software Platforms for Annotation and Dereplication of Peptidic Natural ProductsRicart Altimiras, Emma;
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Digital BloodKotsalos, Christos;
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Hyper-bag-graphs and their applications: Modeling, Analyzing and Visualizing Complex Networks of Co-occurrencesOuvrard, Xavier Eric;
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Learning and understanding partner dance through motion analysis in a virtual environmentSenecal, Simon;
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Metagenomic Characterization of the Virome of Clinical SamplesBrito, Francisco;

2019

Scientific Articles

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A Bioinformatics View of Glycan–Virus InteractionsLe Mercier, Philippe; Mariethoz, Julien; Lascano Maillard, Maria Josefina; Bonnardel, François; ... Lisacek, Frédérique
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A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational spaceClerc, Olivier; Mariethoz, Julien; Rivet, Alain; Lisacek, Frédérique; ... Ricard-Blum, Sylvie
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A targeted proteomics approach reveals a serum protein signature as diagnostic biomarker for resectable gastric cancerShen, Qiujin; Polom, Karol; Williams, Coralie; Marques Souza de Oliveira, Felipe; ... Kamali-Moghaddam, Masood
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Architecture and Evolution of Blade Assembly in β-propeller LectinsBonnardel, François; Kumar, Atul; Wimmerova, Michaela; Lahmann, Martina; ... Imberty, Anne
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Assessing complexity in cellular automata using information theoryChliamovitch, Gregor; Velasquez Reynaga, Lino Ivan; Falcone, Jean-Luc; Chopard, Bastien;
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Bridging the computational gap between mesoscopic and continuum modeling of red blood cells for fully resolved blood flowKotsalos, Christos; Latt, Jonas; Chopard, Bastien;
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Continuum model for flow diverting stents in 3D patient-specific simulation of intracranial aneurysmsLi, Sha; Chopard, Bastien; Latt, Jonas;
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Coupling of lattice Boltzmann shallow water model with lattice Boltzmann free-surface modelThorimbert, Yann; Latt, Jonas; Chopard, Bastien;
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Crowdcloud: a crowdsourced system for cloud infrastructureHosseini, Mahmood; Angelopoulos, Konstantinos Marios; Chai, Wei Koong; Kuendig, Stéphane Jean-Jacques;
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Extensive analysis of the lattice Boltzmann method on shifted stencilsHosseini, S; Coreixas, Christophe Guy; Darabiha, N.; Thévenin, D.;
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GlyConnect: Glycoproteomics Goes Visual, Interactive, and AnalyticalAlocci, Davide; Mariethoz, Julien; Gastaldello, Alessandra; Gasteiger, Elisabeth; ... Lisacek, Frédérique
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Inductive t-SNE via deep learning to visualize multi-label imagesRoman Rangel, Edgar Francisco; Marchand-Maillet, Stéphane;
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Multiscale computing for science and engineering in the era of exascale performanceHoekstra, Alfons G.; Chopard, Bastien; Coster, David; Portegies Zwart, Simon; Coveney, Peter V.
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Recognizing Induced Emotions of Movie Audiences From Multimodal InformationMuszynski, Michal; Tian, Leimin; Lai, Catherine; Moore, Johanna; ... Chanel, Guillaume
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Special Section on Multimodal Understanding of Social, Affective, and Subjective AttributesAlameda-Pineda, Xavier; Redi, Miriam; Soleymani, Mohammad; Sebe, Nicu; ... Gosling, Samuel
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Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and PathogenesisMarcelino, Isabel; Colomé-Calls, Núria; Holzmuller, Philippe; Lisacek, Frédérique; ... Vachiéry, Nathalie
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Towards a standardized bioinformatics infrastructure for N- and O-glycomicsRojas-Macias, Miguel A.; Mariethoz, Julien; Andersson, Peter; Jin, Chunsheng; ... Karlsson, Niclas G.
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UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligandsBonnardel, François; Mariethoz, Julien; Salentin, Sebastian; Robin, Xavier; ... Imberty, Anne
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Updates to the Symbol Nomenclature for Glycans guidelinesNeelamegham, Sriram; Aoki-Kinoshita, Kiyoko; Bolton, Evan; Frank, Martin; ... Woods, Robert J.

Book Chapters

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Geometric Routing Without Coordinates but MeasurementsLeone, Pierre; Samarasinghe, Kasun;
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User Incentivization in Mobile Crowdsensing SystemsAngelopoulos, Konstantinos Marios; Nikoletseas, Sotiris; Raptis, Theofanis P.; Rolim, Jose;

Proceedings Chapters

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A computational model for managing impressions of an embodied conversational agent in real-timeBiancardi, Beatrice; Wang, Chen; Mancini, Maurizio; Cafaro, Angelo; ... Pelachaud, Catherine
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Computing flood probabilities using Twitter: application to the Houston urban area during HarveyBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Implementing a language with explicit assignment semanticsRacordon, Dimitri; Buchs, Didier;
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Indexability-Based Dataset PartitioningHoyos, Angello; Ruiz, Ubaldo; Marchand-Maillet, Stéphane; Chávez, Edgar;
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Introducing Contextual Reasoning to the Semantic Web with OWLcAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;
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Large-scale Nonlinear Variable Selection via Kernel Random FeaturesGregorova, Magda; Ramapuram, Jason Emmanuel; Kalousis, Alexandros; Marchand-Maillet, Stéphane;
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On the Benefits of Anticipating Load Imbalance for Performance Optimization of Parallel ApplicationsBoulmier, Anthony; Raynaud, Franck; Abdennadher, Nabil; Chopard, Bastien;
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Owlc: a contextual two-dimensional web ontology languageAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;
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Your Body Reveals Your Impressions about Others: A Study on Multimodal Impression DetectionWang, Chen; Pun, Thierry; Chanel, Guillaume;

Technical Reports

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Extracting localized information from a Twitter corpus for flood preventionBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Learning by stochastic serializationsStrasser, Pablo Ramon; Armand, Stéphane; Marchand-Maillet, Stéphane; Kalousis, Alexandros;
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State-of-the-art on Current Formalisms used in Cyber-Physical Systems DevelopmentKlikovits, Stefan; Al-Ali, Rima; Amrani, Moussa; Barisic, Ankica; ... Vanherpen, Ken
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The HyperBagGraph DataEdron: An Enriched Browsing Experience of Multimedia DatasetsOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;

Working paper

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Crowdsourced Edge: a Novel Networking Paradigm for the Collaborative CommunityKuendig, Stéphane Jean-Jacques; Rolim, Jose; Angelopoulos, Konstantinos Marios; Hosseini, Mahmood;

Doctoral Thesis

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A domain-specific language approach to hybrid cps modellingKlikovits, Stefan;
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Assistance à la curation de publications scientifiques par des méthodes de triage et d’annotation automatiquesMottin, Luc;
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Continuum model for flow diverting stents of intracranial aneurysmsLi, Sha;
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Lattice Boltzmann simulations of complex flowsThorimbert, Yann;
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Program understanding, the narrative hypothesisHarth, Eric;
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Revisiting memory assignment semantics in imperative programming languagesRacordon, Dimitri;

2018

Scientific Articles

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A Comparative Survey of Methods for Remote Heart Rate Detection From Frontal Face VideosWang, Chen; Pun, Thierry; Chanel, Guillaume;
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Aesthetic Highlight Detection in Movies Based on Synchronization of Spectators’ ReactionsMuszynski, Michal; Kostoulas, Theodoros; Lombardo, Patrizia; Pun, Thierry; Chanel, Guillaume
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Behavioral and Physiological Responses to Visual Interest and Appraisals: Multimodal Analysis and Automatic RecognitionSoleymani, Mohammad; Mortillaro, Marcello;
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Effet des antécédents émotionnels de contrôle et de valeur sur la résolution de problème dans un jeu vidéo collaboratifAvry, Sunny; Chanel, Guillaume; Betrancourt, Mireille; Molinari, Gaëlle;
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Glycomics@ExPASy: Bridging the GapMariethoz, Julien; Alocci, Davide; Gastaldello, Alessandra; Horlacher, Oliver; ... Lisacek, Frédérique
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Impact of immigrants on a multi-agent economical systemKaufmann, Léa Claire; Razakanirina, Ranaivo Mahaleo; Groen, Derek; Chopard, Bastien;
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Lattice Boltzmann simulation of dense rigid spherical particle suspensions using immersed boundary methodThorimbert, Yann; Marson, Francesco; Parmigiani, Andrea; Chopard, Bastien; Latt, Jonas
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Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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Multimodal analysis of user behavior and browsed content under different image search intentsSoleymani, Mohammad; Riegler, Michael; Halvorsen, Pål;
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Multiphase periodic pressure difference boundary condition enhanced by a proportional-integral-derivative controller for the lattice Boltzmann methodLeclaire, Sébastien; Latt, Jonas; Vidal, David; Bertrand, François;
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Multiscale modeling: recent progress and open questionsChopard, Bastien; Falcone, Jean-Luc; Kuenzli, Pierre; Veen, Lourens; Hoekstra, Alfons
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On Adjacency and e-Adjacency in General Hypergraphs: Towards a New e-Adjacency TensorOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;
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Parameter Estimation of Platelets Deposition: Approximate Bayesian Computation With High Performance ComputingDutta, Ritabrata; Chopard, Bastien; Latt, Jonas; Dubois, Frank; ... Mira, Antonietta
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Rendezvous search with markers that can be dropped at chosen timesLeone, Pierre; Alpern, Steve;
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Semantic languages for developing correct language translationsBarroca, Bruno; Amaral, Vasco; Buchs, Didier;
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Sharing Emotions Impacts Computer-Supported Collaborative Processes: Effect of an Emotion Awareness ToolAvry, Sunny; Molinari, Gaëlle;
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SugarSketcher: Quick and Intuitive Online Glycan DrawingAlocci, Davide; Suchánková, Pavla; Costa, Renaud; Hory, Nicolas; ... Lisacek, Frédérique
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The application of the screen-model based approach for stents in cerebral aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopesAlocci, Davide; Ghraichy, Marie; Barletta, Elena; Gastaldello, Alessandra; ... Lisacek, Frédérique

Conference Proceedings

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Modelled Testbeds: Visualizing and Augmenting Physical Testbeds with Virtual ResourcesKuendig, Stéphane Jean-Jacques; Angelopoulos, Konstantinos Marios; Rolim, Jose;
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