Département d'informatique

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2019

Scientific Articles

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A pipeline to translate glycosaminoglycan sequences into 3D models. Application to the exploration of glycosaminoglycan conformational spaceClerc, Olivier; Mariethoz, Julien; Rivet, Alain; Lisacek, Frédérique; ... Ricard-Blum, Sylvie
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Architecture and Evolution of Blade Assembly in β-propeller LectinsBonnardel, François; Kumar, Atul; Wimmerova, Michaela; Lahmann, Martina; ... Imberty, Anne
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Bridging the computational gap between mesoscopic and continuum modeling of red blood cells for fully resolved blood flowKotsalos, Christos; Latt, Jonas; Chopard, Bastien;
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Continuum model for flow diverting stents in 3D patient-specific simulation of intracranial aneurysmsLi, Sha; Chopard, Bastien; Latt, Jonas;
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Coupling of lattice Boltzmann shallow water model with lattice Boltzmann free-surface modelThorimbert, Yann; Latt, Jonas; Chopard, Bastien;
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Crowdcloud: a crowdsourced system for cloud infrastructureHosseini, Mahmood; Angelopoulos, Konstantinos Marios; Chai, Wei Koong; Kuendig, Stéphane Jean-Jacques;
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Extensive analysis of the lattice Boltzmann method on shifted stencilsHosseini, S; Coreixas, Christophe Guy; Darabiha, N.; Thévenin, D.;
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Inductive t-SNE via deep learning to visualize multi-label imagesRoman Rangel, Edgar Francisco; Marchand-Maillet, Stéphane;
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Multiscale computing for science and engineering in the era of exascale performanceHoekstra, Alfons G.; Chopard, Bastien; Coster, David; Portegies Zwart, Simon; Coveney, Peter V.
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Recognizing Induced Emotions of Movie Audiences From Multimodal InformationMuszynski, Michal; Tian, Leimin; Lai, Catherine; Moore, Johanna; ... Chanel, Guillaume
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Special Section on Multimodal Understanding of Social, Affective, and Subjective AttributesAlameda-Pineda, Xavier; Redi, Miriam; Soleymani, Mohammad; Sebe, Nicu; ... Gosling, Samuel
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Towards a standardized bioinformatics infrastructure for N- and O-glycomicsRojas-Macias, Miguel A.; Mariethoz, Julien; Andersson, Peter; Jin, Chunsheng; ... Karlsson, Niclas G.

Conference Proceedings

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Your Body Reveals Your Impressions about Others: A Study on Multimodal Impression DetectionWang, Chen; Pun, Thierry; Chanel, Guillaume;

Book Chapters

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Geometric Routing Without Coordinates but MeasurementsLeone, Pierre; Samarasinghe, Kasun;
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User Incentivization in Mobile Crowdsensing SystemsAngelopoulos, Konstantinos Marios; Nikoletseas, Sotiris; Raptis, Theofanis P.; Rolim, Jose;

Proceedings Chapters

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Computing flood probabilities using Twitter: application to the Houston urban area during HarveyBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Implementing a language with explicit assignment semanticsRacordon, Dimitri; Buchs, Didier;
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Indexability-Based Dataset PartitioningHoyos, Angello; Ruiz, Ubaldo; Marchand-Maillet, Stéphane; Chávez, Edgar;
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Introducing Contextual Reasoning to the Semantic Web with OWLcAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;
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Large-scale Nonlinear Variable Selection via Kernel Random FeaturesGregorova, Magda; Ramapuram, Jason Emmanuel; Kalousis, Alexandros; Marchand-Maillet, Stéphane;
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Owlc: a contextual two-dimensional web ontology languageAljalbout, Sahar; Buchs, Didier; Falquet, Gilles;

Technical Reports

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Extracting localized information from a Twitter corpus for flood preventionBrangbour, Etienne Alaric; Bruneau, Pierrick; Marchand-Maillet, Stéphane; Hostache, Renaud; ... Tamisier, Thomas
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Learning by stochastic serializationsStrasser, Pablo Ramon; Armand, Stéphane; Marchand-Maillet, Stéphane; Kalousis, Alexandros;
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State-of-the-art on Current Formalisms used in Cyber-Physical Systems DevelopmentKlikovits, Stefan; Al-Ali, Rima; Amrani, Moussa; Barisic, Ankica; ... Vanherpen, Ken
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The HyperBagGraph DataEdron: An Enriched Browsing Experience of Multimedia DatasetsOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;

Working paper

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Crowdsourced Edge: a Novel Networking Paradigm for the Collaborative CommunityKuendig, Stéphane Jean-Jacques; Rolim, Jose; Angelopoulos, Konstantinos Marios; Hosseini, Mahmood;

Doctoral Thesis

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A domain-specific language approach to hybrid cps modellingKlikovits, Stefan;
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Assistance à la curation de publications scientifiques par des méthodes de triage et d’annotation automatiquesMottin, Luc;
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Continuum model for flow diverting stents of intracranial aneurysmsLi, Sha;
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Lattice Boltzmann simulations of complex flowsThorimbert, Yann;
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Program understanding, the narrative hypothesisHarth, Eric;
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Revisiting memory assignment semantics in imperative programming languagesRacordon, Dimitri;

2018

Scientific Articles

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A Comparative Survey of Methods for Remote Heart Rate Detection From Frontal Face VideosWang, Chen; Pun, Thierry; Chanel, Guillaume;
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Aesthetic Highlight Detection in Movies Based on Synchronization of Spectators’ ReactionsMuszynski, Michal; Kostoulas, Theodoros; Lombardo, Patrizia; Pun, Thierry; Chanel, Guillaume
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Behavioral and Physiological Responses to Visual Interest and Appraisals: Multimodal Analysis and Automatic RecognitionSoleymani, Mohammad; Mortillaro, Marcello;
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Effet des antécédents émotionnels de contrôle et de valeur sur la résolution de problème dans un jeu vidéo collaboratifAvry, Sunny; Chanel, Guillaume; Betrancourt, Mireille; Molinari, Gaëlle;
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Impact of immigrants on a multi-agent economical systemKaufmann, Léa Claire; Razakanirina, Ranaivo Mahaleo; Groen, Derek; Chopard, Bastien;
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Lattice Boltzmann simulation of dense rigid spherical particle suspensions using immersed boundary methodThorimbert, Yann; Marson, Francesco; Parmigiani, Andrea; Chopard, Bastien; Latt, Jonas
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Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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Multimodal analysis of user behavior and browsed content under different image search intentsSoleymani, Mohammad; Riegler, Michael; Halvorsen, Pål;
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Multiphase periodic pressure difference boundary condition enhanced by a proportional-integral-derivative controller for the lattice Boltzmann methodLeclaire, Sébastien; Latt, Jonas; Vidal, David; Bertrand, François;
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Multiscale modeling: recent progress and open questionsChopard, Bastien; Falcone, Jean-Luc; Kuenzli, Pierre; Veen, Lourens; Hoekstra, Alfons
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On Adjacency and e-Adjacency in General Hypergraphs: Towards a New e-Adjacency TensorOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;
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Parameter Estimation of Platelets Deposition: Approximate Bayesian Computation With High Performance ComputingDutta, Ritabrata; Chopard, Bastien; Latt, Jonas; Dubois, Frank; ... Mira, Antonietta
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Rendezvous search with markers that can be dropped at chosen timesLeone, Pierre; Alpern, Steve;
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Semantic languages for developing correct language translationsBarroca, Bruno; Amaral, Vasco; Buchs, Didier;
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Sharing Emotions Impacts Computer-Supported Collaborative Processes: Effect of an Emotion Awareness ToolAvry, Sunny; Molinari, Gaëlle;
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The application of the screen-model based approach for stents in cerebral aneurysmsLi, Sha; Latt, Jonas; Chopard, Bastien;
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Understanding the glycome: an interactive view of glycosylation from glycocompositions to glycoepitopesAlocci, Davide; Ghraichy, Marie; Barletta, Elena; Gastaldello, Alessandra; ... Lisacek, Frédérique

Conference Proceedings

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Modelled Testbeds: Visualizing and Augmenting Physical Testbeds with Virtual ResourcesKuendig, Stéphane Jean-Jacques; Angelopoulos, Konstantinos Marios; Rolim, Jose;

Proceedings Chapters

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A Model Checker Collection for the Model Checking Contest Using Docker and Machine LearningBuchs, Didier; Klikovits, Stefan; Linard, Alban; Mencattini, Romain; Racordon, Dimitri
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Flow in Computer-Supported Collaborative Problem-SolvingMolinari, Gaëlle; Avry, Sunny;
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Learning Overcomplete and Sparsifying Transform With Approximate and Exact Closed Form SolutionsKostadinov, Dimche; Voloshynovskyy, Svyatoslav; Ferdowsi, Sohrab;
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On {Hb}-graphs and their application to hypergraph e-adjacency tensorOuvrard, Xavier Eric; Le Goff, Jean-Marie; Marchand-Maillet, Stéphane;
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Structured nonlinear variable selectionGregorova, Magda; Kalousis, Alexandros; Marchand-Maillet, Stéphane;
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Towards a Better Gold Standard: Denoising and Modelling Continuous Emotion Annotations Based on Feature Agglomeration and Outlier RegularisationWang, Chen; LOPES, Phil; Pun, Thierry; Chanel, Guillaume;

Doctoral Thesis

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An interactive and integrative view of glycobiologyAlocci, Davide;
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De novo genomics of non-model arthropodsSimao Neto, Felipe;
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Developing algorithms to automate the identification of post translational modification in LC-MS/MS dataHorlacher, Oliver;
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Energy complexity in population model protocolsNoto, Eugenio;
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Fast prototyping and deformation of virtual humansTisserand, Yvain;
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Ground UV irradiance and 3D rendering techniques to predict anatomical solar UV exposure in skin cancer research and preventionReligi, Arianna;
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Learning to compress and search visual data in large-scale systemsFerdowsi, Sohrab;
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Lung tissue analysis: from local visual descriptors to global modelingDicente Cid, Yashin;
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Monitoring gonadal somatic cell differentiation during sex determination using single-cell RNA sequencingStevant, Isabelle;
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Nonlinear transform learning: model, applications and algorithmsKostadinov, Dimche;
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Numerical Modelling of Confluent Cell Monolayers : Study of Tissue Mechanics and MorphogenesisMerzouki, Fatma Aziza;
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Recognizing film aesthetics, spectators' affect and aesthetic emotions from multimodal signalsMuszynski, Michal;
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Sparse learning for variable selection with structures and nonlinearitiesGregorova, Magda;

2017

Scientific Articles

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A Distributed Event-Based System based on Compressed Fragmented-Iterated Bloom FiltersMunoz Illescas, Cristina; Leone, Pierre;
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A physical description of the adhesion and aggregation of plateletsChopard, Bastien; de Sousa, Daniel Ribeiro; Latt, Jonas; Mountrakis, Lampros; ... Boudjeltia, Karim Zouaoui
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A survey of multimodal sentiment analysisSoleymani, Mohammad; Garcia, David; Jou, Brendan; Schuller, Bjorn; ... Pantic, Maja
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Accelerating Bayesian inference for evolutionary biology modelsMeyer, Xavier; Chopard, Bastien; Salamin, Nicolas;
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Developing a benchmark for emotional analysis of musicAljanaki, Anna; Yang, Yi-Hsuan; Soleymani, Mohammad;
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Employing GPU architectures for permutation-based indexingKruliš, Martin; Osipyan, Hasmik; Marchand-Maillet, Stéphane;
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Films, Affective Computing and Aesthetic Experience: Identifying Emotional and Aesthetic Highlights from Multimodal Signals in a Social SettingKostoulas, Theodoros; Chanel, Guillaume; Muszynski, Michal; Lombardo, Patrizia; Pun, Thierry
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Generalized three-dimensional lattice Boltzmann color-gradient method for immiscible two-phase pore-scale imbibition and drainage in porous mediaLeclaire, Sébastien; Parmigiani, Andrea; Malaspinas, Orestis Pileas; Chopard, Bastien; Latt, Jonas
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Hermite regularization of the lattice Boltzmann method for open source computational aeroacousticsBrogi, Federico; Malaspinas, Orestis Pileas; Chopard, Bastien; Bonadonna, Costanza;
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Influence of cell mechanics and proliferation on the buckling of simulated tissues using a vertex modelMerzouki, Fatma Aziza; Malaspinas, Orestis Pileas; Trushko, Anastasiya; Roux, Aurélien; Chopard, Bastien
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Kinetic Theory beyond the StosszahlansatzChliamovitch, Gregor; Malaspinas, Orestis Pileas; Chopard, Bastien;
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Les émotions dans les situations de collaboration et d’apprentissage collaboratif médiatisées par ordinateurMolinari, Gaëlle; Avry, Sunny; Chanel, Guillaume;
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Multilayer Cellular Automata on a Graph Applied to the Exchanges of Cash and GoodsRazakanirina, Ranaivo Mahaleo; Chopard, Bastien;
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MUSCLE-HPC: a new high performance API to couple multiscale parallel applicationsBen Belgacem, Mohamed; Chopard, Bastien;
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On Hölder Projective DivergencesNielsen, Frank; Sun, Ke; Marchand-Maillet, Stéphane;
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Regularized characteristic boundary conditions for the Lattice-Boltzmann methods at high Reynolds number flowsWissocq, Gauthier; Gourdain, Nicolas; Malaspinas, Orestis Pileas; Eyssartier, Alexandre;
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Replication of the principal component analyses of the human genome diversity panelCharlon, Thomas; Di Cara, Alessandro; Voloshynovskyy, Svyatoslav; Wojcik, Jérôme;
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Three-dimensional lattice Boltzmann method benchmarks between color-gradient and pseudo-potential immiscible multi-component modelsLeclaire, Sébastien; Parmigiani, Andrea; Chopard, Bastien; Latt, Jonas;
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Toolbox for Emotional feAture extraction from Physiological signals (TEAP)Soleymani, Mohammad; Villaro-Dixon, Frank; Pun, Thierry; Chanel, Guillaume;
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Wi-Trust : Computational Trust and Reputation Management for Stronger Hotspot 2.0 SecuritySeigneur, Jean-Marc;

Journal Issues

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Toward Commercial Applications of Affective ComputingNovak, Domen; Chanel, Guillaume; Guillotel, Philippe; Koenig, Alexander;

Conference Proceedings

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Approximation, Randomization,and Combinatorial Optimization: Algorithms and Techniques: 20th International Workshop, APPROX 2017, and 21st International Workshop, RANDOM 2017, August 16–18, 2017, Berkeley, CA, USAJansen, Klaus; Rolim, Jose; Williamson, David; Vempala, Santosh S.;
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Enhancing RADIUS based multifactor-factor authentication systems with RESTful API for self-service enrolmentHuseynov, Emin; Seigneur, Jean-Marc;
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Indoor Location for Smart Environments with Wireless Sensor and Actuator NetworksZhao, Zhongliang; Kuendig, Stéphane Jean-Jacques; Carrera, Jose; Carron, Blaise; ... Rolim, Jose
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Sparse ternary codes for similarity search have higher coding gain than dense binary codesFerdowsi, Sohrab; Voloshynovskyy, Svyatoslav; Kostadinov, Dimche; Holotyak, Taras;

Book Chapters

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How do emotions impact conflicts? A neuroscientific perspectiveBogacz, François; Klimecki-Lenz, Olga Maria;

Proceedings Chapters

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An Autonomic Approach for the Selection of Robust Dynamic Loop Scheduling TechniquesBoulmier, Anthony; Banicescu, Ioana; Ciorba, Florina M.; Abdennadher, Nabil;
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