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LEMMI: a continuous benchmarking platform for metagenomics classifiers Seppey, Mathieu; Manni, Mose; Zdobnov, Evgeny 2020
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Phigaro: high-throughput prophage sequence annotation Starikova, Elizaveta V; Tikhonova, Polina O; Prianichnikov, Nikita A; Rands, Christopher; ... Govorun, Vadim M 2020
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The genome of the blind soil-dwelling and ancestrally wingless dipluran campodea augens: a key reference hexapod for studying the emergence of insect innovations Manni, Mose; Simao Neto, Felipe; Robertson, Hugh M; Gabaglio, Marco Aurelio; ... Zdobnov, Evgeny 2020
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ATLAS: a snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data Kieser, Silas; Brown, Joseph; Zdobnov, Evgeny; Trajkovski, Mirko; McCue, Lee Ann 2020
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Viral sequences detection by high-throughput sequencing in cerebrospinal fluid of individuals with and without central nervous system disease Schibler, Manuel; Brito, Francisco; Zanella, Marie-Céline; Zdobnov, Evgeny; ... Kaiser, Laurent 2019
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Comparative genomics groups phages of negativicutes and classical firmicutes despite different gram-staining properties Rands, Christopher; Brüssow, Harald; Zdobnov, Evgeny 2019
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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome Panfilio, Kristen A; Vargas Jentzsch, Iris M; Benoit, Joshua B; Erezyilmaz, Deniz; ... Richards, Stephen 2019
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BUSCO: assessing genome assembly and annotation completeness Seppey, Mathieu; Manni, Mose; Zdobnov, Evgeny 2019
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OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs Kriventseva, Evgenia; Kouznetsov, Dimitri; Tegenfeldt, Fredrik; Manni, Mose; ... Zdobnov, Evgeny 2019
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Using BUSCO to Assess Insect Genomic Resources Waterhouse, Robert M; Seppey, Mathieu; Simao Neto, Felipe; Zdobnov, Evgeny 2019
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Identification of Viral Signatures Using High-Throughput Sequencing on Blood of Patients With Kawasaki Disease L'Huillier, Arnaud; Brito, Francisco; Wagner, Noémie; Cordey, Samuel; ... Kaiser, Laurent 2019
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ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages Rands, Christopher; Starikova, Elizaveta V; Brüssow, Harald; Kriventseva, Evgenia; ... Zdobnov, Evgeny 2018
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Metagenomics analysis of the virome of 300 concentrates from a Swiss platelet bank Brito, Francisco; Cordey, Samuel; Delwart, Eric; Deng, Xutao; ... Preynat-Seauve, Olivier 2018
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In silico Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence Guzina, Jelena; Chen, Wei-Hua; Stankovic, Tamara; Djordjevic, Magdalena; ... Djordjevic, Marko 2018
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Human pegivirus persistence in the human blood virome after allogeneic haematopoietic stem cell transplantation Vu Cantero, Diem-Lan; Cordey, Samuel; Simonetta, Federico; Brito, Francisco; ... Kaiser, Laurent 2018
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[Bioinformatics analysis of antimicrobial resistance genes and prophages colocalized in human gut metagenomes] Starikova, E V; Prianichnikov, N A; Zdobnov, Evgeny; Govorun, V M 2017
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Metagenomics analysis of red blood cell and fresh-frozen plasma units Lau, Pierre; Cordey, Samuel; Brito, Francisco; Tirefort, Diderik; ... Preynat-Seauve, Olivier 2017
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Genomic Features of the Damselfly Calopteryx splendens Representing a Sister Clade to Most Insect Orders Ioannidis, Panagiotis; Simao Neto, Felipe; Waterhouse, Robert; Manni, Mose; ... Zdobnov, Evgeny 2017
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Understanding key features of bacterial restriction-modification systems through quantitative modeling Rodic, Andjela; Blagojevic, Bojana; Zdobnov, Evgeny; Djordjevic, Magdalena; Djordjevic, Marko 2017
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OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs Zdobnov, Evgeny; Tegenfeldt, Fredrik; Kuznetsov, D; Waterhouse, Robert; ... Kriventseva, Evgenia 2017
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