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 TitleAuthors / EditorsDate
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Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service Mottaz, Anais; Pasche, Emilie; Michel, Pierre-André Albert; Mottin, Luc; ... Ruch, Patrick 2022
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Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature Naderi, Nona; Mottaz, Anais; Teodoro, Douglas; Ruch, Patrick 2022
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Classification of Oncology Treatment Responses from French Radiology Reports with Supervised Machine Learning Goldman, Jean-Philippe; Mottin, Luc; Zaghir, Jamil; Keszthelyi, Daniel; ... Lovis, Christian 2022
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Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora Naderi, Nona; Knafou, Julien David Marc; Copara Zea, Jenny Linet; Ruch, Patrick; Teodoro, Douglas 2021
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UPCLASS: a deep learning-based classifier for UniProtKB entry publications Teodoro, Douglas; Knafou, Julien David Marc; Naderi, Nona; Pasche, Emilie; ... Ruch, Patrick 2020
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Contextualized French Language Models for Biomedical Named Entity Recognition Copara Zea, Jenny Linet; Knafou, Julien David Marc; Naderi, Nona; Moro, Claudia; ... Teodoro, Douglas 2020
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BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models Knafou, Julien David Marc; Naderi, Nona; Copara Zea, Jenny Linet; Teodoro, Douglas; Ruch, Patrick 2020
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Named entity recognition in chemical patents using ensemble of contextual language models Copara Zea, Jenny Linet; Naderi, Nona; Knafou, Julien David Marc; Ruch, Patrick; Teodoro, Douglas 2020
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An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents He, Jiayuan; Quoc Nguyen, Dat; Akhondi, Saber A.; Druckenbrodt, Christian; ... Verspoor, Karin 2020
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A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts van Rijen, Paul; Teodoro, Douglas; Naderi, Nona; Mottin, Luc; ... Ruch, Patrick 2019
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A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts Naderi, Nona; Gobeill, Julien; Teodoro, Douglas; Pasche, Emilie; Ruch, Patrick 2019
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SIB Text Mining at TREC 2019 Deep Learning Track: Working Note Knafou, Julien David Marc; Jeffryes, Matt; Mottin, Luc; Teodoro, Douglas; Ruch, Patrick 2019
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ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers Teodoro, Douglas; Sundvall, Erik; João Junior, Mario; Ruch, Patrick; Miranda Freire, Sergio 2018
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Triage by ranking to support the curation of protein interactions Mottin, Luc; Pasche, Emilie; Gobeill, Julien; Rech De Laval, Valentine; ... Ruch, Patrick 2017
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Improving average ranking precision in user searches for biomedical research datasets Teodoro, Douglas; Mottin, Luc; Gobeill, Julien; Gaudinat, Arnaud; ... Ruch, Patrick 2017
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neXtA5: accelerating annotation of articles via automated approaches in neXtProt Mottin, Luc; Gobeill, Julien; Pasche, Emilie; Michel, Pierre-André Albert; ... Ruch, Patrick 2016
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Deep Question Answering for protein annotation Gobeill, Julien; Gaudinat, Arnaud; Pasche, Emilie; Vishnyakova, Dina; ... Ruch, Patrick 2015
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Development and tuning of an original search engine for patent libraries in medicinal chemistry Pasche, Emilie; Gobeill, Julien; Kreim, Olivier; Oezdemir-Zaech, Fatma; ... Ruch, Patrick 2014
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ToxiCat: Hybrid Named Entity Recognition services to support curation of the Comparative Toxicogenomic Database Vishnyakova, Dina; Gobeill, Julien; Pasche, Emilie; Ruch, Patrick 2013
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Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases Gobeill, Julien; Pasche, Emilie; Vishnyakova, Dina; Ruch, Patrick 2013
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